(14 nodes) Preribosome, small subunit precursor network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167MA83	CBF domain-containing protein. (482 aa)
	A0A167R716	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (407 aa)
	A0A167NUQ6	DRIM domain-containing protein. (1769 aa)
	A0A167MQ63	RIO domain-containing protein. (322 aa)
	A0A167LNF4	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (305 aa)
	A0A167L961	Uncharacterized protein. (168 aa)
	A0A167L947	Uncharacterized protein. (256 aa)
	A0A163DR42	Uncharacterized protein. (463 aa)
	A0A163D4D9	DUF663 domain-containing protein. (160 aa)
	A0A162XV83	Uncharacterized protein. (224 aa)
	A0A162TPF9	Uncharacterized protein. (183 aa)
	A0A162TMJ8	Uncharacterized protein. (157 aa)
	A0A162NE93	Uncharacterized protein. (313 aa)
	A0A162N504	Uncharacterized protein. (335 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N504	A0A162TMJ8	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A162N504	A0A162XV83	Uncharacterized protein.	Uncharacterized protein.	0.958
A0A162N504	A0A163D4D9	Uncharacterized protein.	DUF663 domain-containing protein.	0.999
A0A162N504	A0A167L947	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162N504	A0A167L961	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162N504	A0A167LNF4	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.999
A0A162N504	A0A167MA83	Uncharacterized protein.	CBF domain-containing protein.	0.998
A0A162N504	A0A167MQ63	Uncharacterized protein.	RIO domain-containing protein.	0.997
A0A162N504	A0A167NUQ6	Uncharacterized protein.	DRIM domain-containing protein.	0.958
A0A162N504	A0A167R716	Uncharacterized protein.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
A0A162TMJ8	A0A162N504	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A162TMJ8	A0A162TPF9	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A162TMJ8	A0A162XV83	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A162TMJ8	A0A163D4D9	Uncharacterized protein.	DUF663 domain-containing protein.	0.783
A0A162TMJ8	A0A167L947	Uncharacterized protein.	Uncharacterized protein.	0.753
A0A162TMJ8	A0A167L961	Uncharacterized protein.	Uncharacterized protein.	0.753
A0A162TMJ8	A0A167LNF4	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.815
A0A162TMJ8	A0A167MA83	Uncharacterized protein.	CBF domain-containing protein.	0.913
A0A162TMJ8	A0A167MQ63	Uncharacterized protein.	RIO domain-containing protein.	0.621
A0A162TMJ8	A0A167NUQ6	Uncharacterized protein.	DRIM domain-containing protein.	0.586