(25 nodes) mRNA 3-end processing network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167QNZ1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (591 aa)
	A0A167Q8P8	Cleavage and polyadenylation specificity factor subunit 2. (781 aa)
	A0A167PVN8	CID domain-containing protein. (130 aa)
	A0A167NHF0	Uncharacterized protein. (180 aa)
	A0A167NFL0	Plus3 domain-containing protein. (536 aa)
	A0A167MRV2	Uncharacterized protein. (396 aa)
	A0A167M5N5	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (199 aa)
	A0A167LJA8	CCCH-type zinc finger transcription factor. (138 aa)
	A0A167LDA7	RRM domain-containing protein. (73 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (436 aa)
	A0A167L6I8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (507 aa)
	A0A167KE78	DUF1775 domain-containing protein. (226 aa)
	A0A167KBN5	DUF3453 domain-containing protein. (302 aa)
	A0A167J5R3	Uncharacterized protein. (449 aa)
	A0A163DXW9	WD_REPEATS_REGION domain-containing protein. (410 aa)
	A0A163DPY8	Fip1 domain-containing protein. (344 aa)
	A0A163B787	Uncharacterized protein. (373 aa)
	A0A163AH94	RPOL4c domain-containing protein. (145 aa)
	A0A162XGA6	Uncharacterized protein. (1087 aa)
	A0A162X7D5	WD_REPEATS_REGION domain-containing protein. (315 aa)
	A0A162THU1	WD_REPEATS_REGION domain-containing protein. (415 aa)
	A0A162NKG9	Uncharacterized protein. (616 aa)
	A0A167R4H8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (578 aa)
	A0A167R6M8	Uncharacterized protein. (87 aa)
	A0A167R6P1	TPR_REGION domain-containing protein. (598 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162NKG9	A0A162THU1	A0A162NKG9	A0A162THU1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.948
A0A162NKG9	A0A162X7D5	A0A162NKG9	A0A162X7D5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
A0A162NKG9	A0A162XGA6	A0A162NKG9	A0A162XGA6	Uncharacterized protein.	Uncharacterized protein.	0.488
A0A162NKG9	A0A163AH94	A0A162NKG9	A0A163AH94	Uncharacterized protein.	RPOL4c domain-containing protein.	0.772
A0A162NKG9	A0A163B787	A0A162NKG9	A0A163B787	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A162NKG9	A0A163DPY8	A0A162NKG9	A0A163DPY8	Uncharacterized protein.	Fip1 domain-containing protein.	0.999
A0A162NKG9	A0A163DXW9	A0A162NKG9	A0A163DXW9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A162NKG9	A0A167J5R3	A0A162NKG9	A0A167J5R3	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A162NKG9	A0A167KBN5	A0A162NKG9	A0A167KBN5	Uncharacterized protein.	DUF3453 domain-containing protein.	0.999
A0A162NKG9	A0A167KE78	A0A162NKG9	A0A167KE78	Uncharacterized protein.	DUF1775 domain-containing protein.	0.879
A0A162NKG9	A0A167L6I8	A0A162NKG9	A0A167L6I8	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.968
A0A162NKG9	A0A167LDA7	A0A162NKG9	A0A167LDA7	Uncharacterized protein.	RRM domain-containing protein.	0.986
A0A162NKG9	A0A167LJA8	A0A162NKG9	A0A167LJA8	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.999
A0A162NKG9	A0A167M5N5	A0A162NKG9	A0A167M5N5	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.836
A0A162NKG9	A0A167MRV2	A0A162NKG9	A0A167MRV2	Uncharacterized protein.	Uncharacterized protein.	0.496
A0A162NKG9	A0A167PVN8	A0A162NKG9	A0A167PVN8	Uncharacterized protein.	CID domain-containing protein.	0.977
A0A162NKG9	A0A167Q8P8	A0A162NKG9	A0A167Q8P8	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
A0A162NKG9	A0A167QNZ1	A0A162NKG9	A0A167QNZ1	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.968
A0A162NKG9	A0A167R4H8	A0A162NKG9	A0A167R4H8	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.968
A0A162NKG9	A0A167R6M8	A0A162NKG9	A0A167R6M8	Uncharacterized protein.	Uncharacterized protein.	0.951