(5 nodes) Ctf18 RFC-like complex network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167KG19	AAA domain-containing protein. (357 aa)
	A0A167JD07	Uncharacterized protein. (349 aa)
	A0A162ZWE1	AAA domain-containing protein. (337 aa)
	A0A162UJ56	Uncharacterized protein. (368 aa)
	A0A167QT68	Uncharacterized protein. (130 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162UJ56	A0A162ZWE1	Uncharacterized protein.	AAA domain-containing protein.	0.952
A0A162UJ56	A0A167JD07	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162UJ56	A0A167KG19	Uncharacterized protein.	AAA domain-containing protein.	0.960
A0A162UJ56	A0A167QT68	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162ZWE1	A0A162UJ56	AAA domain-containing protein.	Uncharacterized protein.	0.952
A0A162ZWE1	A0A167JD07	AAA domain-containing protein.	Uncharacterized protein.	0.999
A0A162ZWE1	A0A167KG19	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A162ZWE1	A0A167QT68	AAA domain-containing protein.	Uncharacterized protein.	0.963
A0A167JD07	A0A162UJ56	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A167JD07	A0A162ZWE1	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A167JD07	A0A167KG19	Uncharacterized protein.	AAA domain-containing protein.	0.999
A0A167JD07	A0A167QT68	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A167KG19	A0A162UJ56	AAA domain-containing protein.	Uncharacterized protein.	0.960
A0A167KG19	A0A162ZWE1	AAA domain-containing protein.	AAA domain-containing protein.	0.999
A0A167KG19	A0A167JD07	AAA domain-containing protein.	Uncharacterized protein.	0.999
A0A167KG19	A0A167QT68	AAA domain-containing protein.	Uncharacterized protein.	0.957
A0A167QT68	A0A162UJ56	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167QT68	A0A162ZWE1	Uncharacterized protein.	AAA domain-containing protein.	0.963
A0A167QT68	A0A167JD07	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A167QT68	A0A167KG19	Uncharacterized protein.	AAA domain-containing protein.	0.957