(25 nodes) 5-3 RNA polymerase activity network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162NH54	Uncharacterized protein. (58 aa)
	A0A162NHM1	Uncharacterized protein. (211 aa)
	A0A162Q8J6	Uncharacterized protein. (306 aa)
	A0A162TC68	Uncharacterized protein. (62 aa)
	A0A162TY78	Uncharacterized protein. (209 aa)
	A0A162U8Y9	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (425 aa)
	A0A162UWR5	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (999 aa)
	A0A162WP08	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1195 aa)
	A0A162XC13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1392 aa)
	A0A163A6F8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (599 aa)
	RdRP-1b	RNA-dependent RNA polymerase. (1112 aa)
	A0A163B6A5	Uncharacterized protein. (120 aa)
	RdRP-3	RNA-dependent RNA polymerase. (1200 aa)
	A0A163D2G5	RNA_pol_L_2 domain-containing protein. (95 aa)
	A0A167JQJ2	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (222 aa)
	A0A167KF55	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1149 aa)
	A0A167M829	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (281 aa)
	A0A167NAY7	Uncharacterized protein. (122 aa)
	RdRP-1a	RNA-dependent RNA polymerase. (1238 aa)
	A0A167NL99	RNA_pol_L_2 domain-containing protein. (149 aa)
	A0A167P0B8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1646 aa)
	A0A167P286	RPOLD domain-containing protein. (349 aa)
	RdRP-2	RNA-dependent RNA polymerase. (1278 aa)
	A0A167QXW1	Uncharacterized protein. (58 aa)
	A0A167R707	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162NH54	A0A162NHM1	A0A162NH54	A0A162NHM1	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A162NH54	A0A162Q8J6	A0A162NH54	A0A162Q8J6	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A162NH54	A0A162TC68	A0A162NH54	A0A162TC68	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A162NH54	A0A162TY78	A0A162NH54	A0A162TY78	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162NH54	A0A162WP08	A0A162NH54	A0A162WP08	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
A0A162NH54	A0A162XC13	A0A162NH54	A0A162XC13	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
A0A162NH54	A0A163A6F8	A0A162NH54	A0A163A6F8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
A0A162NH54	A0A163B6A5	A0A162NH54	A0A163B6A5	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A162NH54	A0A163D2G5	A0A162NH54	A0A163D2G5	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.984
A0A162NH54	A0A167JQJ2	A0A162NH54	A0A167JQJ2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.969
A0A162NH54	A0A167KF55	A0A162NH54	A0A167KF55	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
A0A162NH54	A0A167M829	A0A162NH54	A0A167M829	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.973
A0A162NH54	A0A167NAY7	A0A162NH54	A0A167NAY7	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A162NH54	A0A167NL99	A0A162NH54	A0A167NL99	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.989
A0A162NH54	A0A167P0B8	A0A162NH54	A0A167P0B8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
A0A162NH54	A0A167P286	A0A162NH54	A0A167P286	Uncharacterized protein.	RPOLD domain-containing protein.	0.984
A0A162NH54	A0A167R707	A0A162NH54	A0A167R707	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.976
A0A162NH54	RdRP-1a	A0A162NH54	A0A167NFN8	Uncharacterized protein.	RNA-dependent RNA polymerase.	0.400
A0A162NH54	RdRP-1b	A0A162NH54	A0A163ABK2	Uncharacterized protein.	RNA-dependent RNA polymerase.	0.400
A0A162NH54	RdRP-2	A0A162NH54	A0A167Q545	Uncharacterized protein.	RNA-dependent RNA polymerase.	0.400