(16 nodes) ncRNA catabolic process network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A163A803	S1 motif domain-containing protein. (191 aa)
	A0A162XPK2	RNase_PH domain-containing protein. (262 aa)
	A0A162NH30	Uncharacterized protein. (234 aa)
	A0A162TJ63	RNase_PH domain-containing protein. (230 aa)
	A0A167L3A2	HRDC domain-containing protein. (528 aa)
	A0A167M3M7	Uncharacterized protein. (185 aa)
	A0A167M8S7	Uncharacterized protein. (268 aa)
	A0A167QYT3	RNB domain-containing protein; Belongs to the RNR ribonuclease family. (957 aa)
	A0A167RDA1	Uncharacterized protein. (277 aa)
	A0A162TPH7	Uncharacterized protein. (278 aa)
	A0A162UBS3	Uncharacterized protein. (1072 aa)
	A0A162UW30	YTH domain-containing protein. (570 aa)
	A0A162N8A9	Uncharacterized protein. (303 aa)
	A0A162N370	Uncharacterized protein. (258 aa)
	A0A167KBK0	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (387 aa)
	A0A163D7V4	Uncharacterized protein. (265 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N370	A0A162N8A9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N370	A0A162NH30	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N370	A0A162TJ63	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A162N370	A0A162TPH7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N370	A0A162UBS3	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A162N370	A0A162UW30	Uncharacterized protein.	YTH domain-containing protein.	0.786
A0A162N370	A0A162XPK2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.997
A0A162N370	A0A163A803	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
A0A162N370	A0A167L3A2	Uncharacterized protein.	HRDC domain-containing protein.	0.491
A0A162N370	A0A167M3M7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A162N370	A0A167M8S7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N370	A0A167QYT3	Uncharacterized protein.	RNB domain-containing protein; Belongs to the RNR ribonuclease family.	0.959
A0A162N370	A0A167RDA1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N8A9	A0A162N370	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N8A9	A0A162NH30	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N8A9	A0A162TJ63	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A162N8A9	A0A162TPH7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N8A9	A0A162UBS3	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A162N8A9	A0A162UW30	Uncharacterized protein.	YTH domain-containing protein.	0.794
A0A162N8A9	A0A162XPK2	Uncharacterized protein.	RNase_PH domain-containing protein.	0.995