(12 nodes) SMN-Sm protein complex network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162V3A6	F-box domain-containing protein. (349 aa)
	A0A162NIJ6	Sm domain-containing protein. (172 aa)
	A0A162PUH9	WD_REPEATS_REGION domain-containing protein. (1120 aa)
	A0A162PWY6	WD_REPEATS_REGION domain-containing protein. (321 aa)
	A0A162URN8	F-box domain-containing protein. (460 aa)
	A0A162XQI6	Small nuclear ribonucleoprotein G. (76 aa)
	A0A162XQT5	Uncharacterized protein. (260 aa)
	A0A163AU93	Uncharacterized protein. (224 aa)
	A0A163DF35	Uncharacterized protein. (152 aa)
	A0A167KWB7	Uncharacterized protein. (88 aa)
	A0A167L161	SMN domain-containing protein. (154 aa)
	A0A167MH92	Uncharacterized protein; Belongs to the DEAD box helicase family. (364 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NIJ6	A0A162PUH9	Sm domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.798
A0A162NIJ6	A0A162URN8	Sm domain-containing protein.	F-box domain-containing protein.	0.962
A0A162NIJ6	A0A162V3A6	Sm domain-containing protein.	F-box domain-containing protein.	0.962
A0A162NIJ6	A0A162XQI6	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.974
A0A162NIJ6	A0A163AU93	Sm domain-containing protein.	Uncharacterized protein.	0.843
A0A162NIJ6	A0A163DF35	Sm domain-containing protein.	Uncharacterized protein.	0.476
A0A162NIJ6	A0A167L161	Sm domain-containing protein.	SMN domain-containing protein.	0.896
A0A162NIJ6	A0A167MH92	Sm domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.790
A0A162PUH9	A0A162NIJ6	WD_REPEATS_REGION domain-containing protein.	Sm domain-containing protein.	0.798
A0A162PUH9	A0A162PWY6	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.683
A0A162PUH9	A0A162URN8	WD_REPEATS_REGION domain-containing protein.	F-box domain-containing protein.	0.760
A0A162PUH9	A0A162V3A6	WD_REPEATS_REGION domain-containing protein.	F-box domain-containing protein.	0.760
A0A162PUH9	A0A162XQI6	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein G.	0.760
A0A162PUH9	A0A163AU93	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.895
A0A162PUH9	A0A163DF35	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.786
A0A162PUH9	A0A167L161	WD_REPEATS_REGION domain-containing protein.	SMN domain-containing protein.	0.927
A0A162PUH9	A0A167MH92	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.981
A0A162PWY6	A0A162PUH9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.683
A0A162PWY6	A0A163AU93	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.816
A0A162PWY6	A0A167L161	WD_REPEATS_REGION domain-containing protein.	SMN domain-containing protein.	0.821