(39 nodes) Ribosome assembly network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162NI19	Uncharacterized protein. (265 aa)
	A0A162URC2	WD_REPEATS_REGION domain-containing protein. (904 aa)
	A0A162V573	Uncharacterized protein. (112 aa)
	RPS0-2	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (283 aa)
	A0A163BCR2	Uncharacterized protein. (791 aa)
	A0A163BD86	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (145 aa)
	A0A163DYX2	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (536 aa)
	A0A163E803	Ribosomal_L18_c domain-containing protein. (293 aa)
	A0A167L6E4	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (137 aa)
	A0A167LC35	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (224 aa)
	A0A167LZE4	Uncharacterized protein. (147 aa)
	A0A167M5G2	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (310 aa)
	A0A167N1N9	Ribosomal_L18_c domain-containing protein. (294 aa)
	A0A167N5B1	Ribosomal_L16 domain-containing protein. (216 aa)
	A0A167NS43	40S ribosomal protein S27. (84 aa)
	A0A162UMT3	Brix domain-containing protein. (291 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	A0A162U7A8	Uncharacterized protein. (319 aa)
	A0A162TV89	Brix domain-containing protein. (323 aa)
	A0A167PH19	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	A0A167PSM1	Exonuclease domain-containing protein. (169 aa)
	A0A167PWY0	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (148 aa)
	A0A167Q2A2	40S ribosomal protein S27. (84 aa)
	A0A167Q9N0	Tr-type G domain-containing protein. (1053 aa)
	RPS0-3	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	A0A167QFQ2	Uncharacterized protein. (146 aa)
	A0A167QTH7	Uncharacterized protein. (1451 aa)
	A0A167QV90	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4023 aa)
	A0A167QZD7	40S ribosomal protein S27. (84 aa)
	A0A167R2V5	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (431 aa)
	A0A167REX1	WD_REPEATS_REGION domain-containing protein. (433 aa)
	A0A167P1W3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (223 aa)
	A0A167P9B8	Uncharacterized protein. (195 aa)
	A0A167PAF3	Ribosomal_L18_c domain-containing protein. (286 aa)
	A0A167NWS2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (85 aa)
	A0A162UN62	CP-type G domain-containing protein. (672 aa)
	A0A162TRI9	WD_REPEATS_REGION domain-containing protein. (467 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)
	A0A162NJP1	W2 domain-containing protein. (382 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162NJP1	A0A162UMT3	A0A162NJP1	A0A162UMT3	W2 domain-containing protein.	Brix domain-containing protein.	0.424
A0A162NJP1	A0A162UN62	A0A162NJP1	A0A162UN62	W2 domain-containing protein.	CP-type G domain-containing protein.	0.496
A0A162NJP1	A0A162V573	A0A162NJP1	A0A162V573	W2 domain-containing protein.	Uncharacterized protein.	0.889
A0A162NJP1	A0A167L6E4	A0A162NJP1	A0A167L6E4	W2 domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.900
A0A162NJP1	A0A167LZE4	A0A162NJP1	A0A167LZE4	W2 domain-containing protein.	Uncharacterized protein.	0.927
A0A162NJP1	A0A167NS43	A0A162NJP1	A0A167NS43	W2 domain-containing protein.	40S ribosomal protein S27.	0.894
A0A162NJP1	A0A167Q2A2	A0A162NJP1	A0A167Q2A2	W2 domain-containing protein.	40S ribosomal protein S27.	0.894
A0A162NJP1	A0A167QFQ2	A0A162NJP1	A0A167QFQ2	W2 domain-containing protein.	Uncharacterized protein.	0.927
A0A162NJP1	A0A167QZD7	A0A162NJP1	A0A167QZD7	W2 domain-containing protein.	40S ribosomal protein S27.	0.894
A0A162NJP1	RPS0	A0A162NJP1	A0A162UBM1	W2 domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.900
A0A162NJP1	RPS0-2	A0A162NJP1	A0A162XNZ5	W2 domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.900
A0A162NJP1	RPS0-3	A0A162NJP1	A0A167QE76	W2 domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.900
A0A162NJP1	TIF6	A0A162NJP1	A0A162PRG7	W2 domain-containing protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.473
A0A162TRI9	A0A162TV89	A0A162TRI9	A0A162TV89	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.984
A0A162TRI9	A0A162UMT3	A0A162TRI9	A0A162UMT3	WD_REPEATS_REGION domain-containing protein.	Brix domain-containing protein.	0.715
A0A162TRI9	A0A162UN62	A0A162TRI9	A0A162UN62	WD_REPEATS_REGION domain-containing protein.	CP-type G domain-containing protein.	0.764
A0A162TRI9	A0A162URC2	A0A162TRI9	A0A162URC2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.830
A0A162TRI9	A0A163BD86	A0A162TRI9	A0A163BD86	WD_REPEATS_REGION domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.775
A0A162TRI9	A0A163E803	A0A162TRI9	A0A163E803	WD_REPEATS_REGION domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.806
A0A162TRI9	A0A167LC35	A0A162TRI9	A0A167LC35	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.412