(18 nodes) Homologous chromosome segregation network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A163B643	Uncharacterized protein. (178 aa)
	A0A163D827	Uncharacterized protein. (241 aa)
	A0A163E7C7	Uncharacterized protein. (1152 aa)
	A0A163EG91	Uncharacterized protein. (106 aa)
	A0A167KMD1	RING-type domain-containing protein. (260 aa)
	A0A167LCF6	Uncharacterized protein. (580 aa)
	A0A167P8B5	Uncharacterized protein. (779 aa)
	A0A162N632	Ubiquitin-like domain-containing protein. (458 aa)
	A0A162UPA9	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily. (303 aa)
	A0A162WGS2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (320 aa)
	A0A162YL98	Serine/Threonine kinase CK1. (307 aa)
	A0A167R6G4	CCCH-type zinc finger transcription factor. (733 aa)
	A0A162TSC1	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily. (305 aa)
	A0A162U643	Csm1 domain-containing protein. (289 aa)
	A0A162UN24	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily. (305 aa)
	A0A162PY93	Uncharacterized protein. (259 aa)
	A0A162TGD1	Uncharacterized protein. (1515 aa)
	A0A163ANU3	SUN domain-containing protein. (846 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162PY93	A0A162U643	Uncharacterized protein.	Csm1 domain-containing protein.	0.945
A0A162TSC1	A0A162U643	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	Csm1 domain-containing protein.	0.464
A0A162TSC1	A0A167LCF6	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.538
A0A162U643	A0A162PY93	Csm1 domain-containing protein.	Uncharacterized protein.	0.945
A0A162U643	A0A162TSC1	Csm1 domain-containing protein.	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	0.464
A0A162U643	A0A162UN24	Csm1 domain-containing protein.	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	0.464
A0A162U643	A0A162UPA9	Csm1 domain-containing protein.	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	0.464
A0A162U643	A0A162YL98	Csm1 domain-containing protein.	Serine/Threonine kinase CK1.	0.464
A0A162U643	A0A163ANU3	Csm1 domain-containing protein.	SUN domain-containing protein.	0.539
A0A162UN24	A0A162U643	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	Csm1 domain-containing protein.	0.464
A0A162UN24	A0A167LCF6	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.538
A0A162UPA9	A0A162U643	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	Csm1 domain-containing protein.	0.464
A0A162UPA9	A0A167LCF6	Serine/Threonine kinase CK1; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.538
A0A162WGS2	A0A167LCF6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.419
A0A162YL98	A0A162U643	Serine/Threonine kinase CK1.	Csm1 domain-containing protein.	0.464
A0A162YL98	A0A167LCF6	Serine/Threonine kinase CK1.	Uncharacterized protein.	0.538
A0A163ANU3	A0A162U643	SUN domain-containing protein.	Csm1 domain-containing protein.	0.539
A0A163E7C7	A0A167LCF6	Uncharacterized protein.	Uncharacterized protein.	0.453
A0A163E7C7	A0A167P8B5	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A167KMD1	A0A167P8B5	RING-type domain-containing protein.	Uncharacterized protein.	0.516