(44 nodes) Negative regulation of mitotic cell cycle network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162YL45	Uncharacterized protein. (1079 aa)
	A0A163D0E4	Uncharacterized protein. (172 aa)
	A0A163DNI4	Uncharacterized protein. (205 aa)
	A0A163E870	Uncharacterized protein. (516 aa)
	A0A163EPI0	HORMA domain-containing protein. (185 aa)
	A0A167QV90	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4023 aa)
	A0A167R601	Uncharacterized protein. (517 aa)
	A0A167JJW8	Uncharacterized protein. (186 aa)
	A0A167R8V7	NDK domain-containing protein; Belongs to the NDK family. (154 aa)
	A0A167JPZ2	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (446 aa)
	A0A162N356	AAA domain-containing protein. (603 aa)
	A0A167KZU6	Uncharacterized protein. (250 aa)
	A0A167KZV4	Uncharacterized protein. (264 aa)
	A0A167L0S4	GAR domain-containing protein. (142 aa)
	A0A167L2R9	PARP-type domain-containing protein. (189 aa)
	A0A167L382	Cell division control protein; Belongs to the CDC6/cdc18 family. (533 aa)
	A0A167L451	Checkpoint protein; Belongs to the HUS1 family. (271 aa)
	A0A167LCG4	MPN domain-containing protein. (452 aa)
	A0A167NI31	Uncharacterized protein. (685 aa)
	A0A167NNZ2	WD_REPEATS_REGION domain-containing protein. (336 aa)
	A0A167PUX8	C2H2-type zinc finger transcription factor. (324 aa)
	A0A162N8V3	Uncharacterized protein. (679 aa)
	A0A162NEM1	BUB1 N-terminal domain-containing protein. (600 aa)
	A0A162NG38	Uncharacterized protein. (240 aa)
	A0A162NGZ0	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (437 aa)
	A0A162PQN9	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (431 aa)
	A0A162PRI3	Uncharacterized protein. (357 aa)
	A0A162PUM7	Uncharacterized protein. (615 aa)
	A0A162PUR4	Uncharacterized protein. (625 aa)
	A0A162PVH7	RRM_2 domain-containing protein. (114 aa)
	A0A162Q6I2	Uncharacterized protein. (609 aa)
	A0A162TGD1	Uncharacterized protein. (1515 aa)
	A0A162TRM8	FHA domain-containing protein. (159 aa)
	A0A162TTX5	Uncharacterized protein. (265 aa)
	A0A162TV20	Rab-GAP TBC domain-containing protein. (369 aa)
	A0A162VBI8	SLD3 domain-containing protein. (1003 aa)
	A0A162WGS2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (320 aa)
	A0A162WKP2	GAR domain-containing protein. (884 aa)
	A0A162WRV1	Uncharacterized protein. (862 aa)
	A0A162XG32	Uncharacterized protein. (213 aa)
	A0A162XJI2	Uncharacterized protein. (292 aa)
	A0A162XPD4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (255 aa)
	A0A162XTE5	Uncharacterized protein. (618 aa)
	A0A162YFX8	C2H2-type zinc finger transcription factor. (65 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N356	A0A162TGD1	AAA domain-containing protein.	Uncharacterized protein.	0.429
A0A162N356	A0A162XJI2	AAA domain-containing protein.	Uncharacterized protein.	0.996
A0A162N356	A0A162XPD4	AAA domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.538
A0A162N356	A0A162XTE5	AAA domain-containing protein.	Uncharacterized protein.	0.983
A0A162N356	A0A163EPI0	AAA domain-containing protein.	HORMA domain-containing protein.	0.419
A0A162N356	A0A167L382	AAA domain-containing protein.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.631
A0A162N356	A0A167L451	AAA domain-containing protein.	Checkpoint protein; Belongs to the HUS1 family.	0.989
A0A162N8V3	A0A162TV20	Uncharacterized protein.	Rab-GAP TBC domain-containing protein.	0.480
A0A162N8V3	A0A163D0E4	Uncharacterized protein.	Uncharacterized protein.	0.550
A0A162NEM1	A0A162PUM7	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.587
A0A162NEM1	A0A162Q6I2	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.587
A0A162NEM1	A0A162TGD1	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.414
A0A162NEM1	A0A162TV20	BUB1 N-terminal domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.473
A0A162NEM1	A0A162VBI8	BUB1 N-terminal domain-containing protein.	SLD3 domain-containing protein.	0.463
A0A162NEM1	A0A162WRV1	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.797
A0A162NEM1	A0A162XPD4	BUB1 N-terminal domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.501
A0A162NEM1	A0A162YFX8	BUB1 N-terminal domain-containing protein.	C2H2-type zinc finger transcription factor.	0.486
A0A162NEM1	A0A162YL45	BUB1 N-terminal domain-containing protein.	Uncharacterized protein.	0.463
A0A162NEM1	A0A163EPI0	BUB1 N-terminal domain-containing protein.	HORMA domain-containing protein.	0.994
A0A162NEM1	A0A167L382	BUB1 N-terminal domain-containing protein.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.510