(34 nodes) Cell development network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162UJN5	Uncharacterized protein. (255 aa)
	A0A162UXJ6	RING-type domain-containing protein. (455 aa)
	A0A162V019	PIPK domain-containing protein. (423 aa)
	A0A167NN24	Uncharacterized protein. (206 aa)
	A0A167MPT9	Uncharacterized protein. (282 aa)
	A0A167MPP7	Homeodomain-like DNA binding domain-containing transcription factor. (340 aa)
	A0A167M373	PIPK domain-containing protein. (431 aa)
	A0A167KL44	TMF_TATA_bd domain-containing protein. (180 aa)
	A0A167KD92	Uncharacterized protein. (460 aa)
	A0A167JNU8	Uncharacterized protein. (452 aa)
	A0A167JJS4	Uncharacterized protein. (187 aa)
	A0A167P743	Uncharacterized protein. (676 aa)
	A0A167RDZ8	Chitin deacetylase. (376 aa)
	A0A162Y3X1	PIPK domain-containing protein. (459 aa)
	A0A162ZQW7	Cdk-PCTAIRE; Belongs to the protein kinase superfamily. (303 aa)
	A0A163B4F4	Uncharacterized protein. (3376 aa)
	A0A163B643	Uncharacterized protein. (178 aa)
	A0A163D695	Protein kinase domain-containing protein. (1282 aa)
	A0A163DBS7	PLD phosphodiesterase domain-containing protein. (423 aa)
	A0A163EG91	Uncharacterized protein. (106 aa)
	A0A163ELX9	Carbohydrate esterase family 4 protein. (399 aa)
	A0A163ERE0	PIPK domain-containing protein. (412 aa)
	A0A162PUA5	Uncharacterized protein. (166 aa)
	A0A162PPA0	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament. (393 aa)
	A0A162Q121	CRAL-TRIO domain-containing protein. (319 aa)
	A0A162T2U0	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (534 aa)
	A0A162TB98	Uncharacterized protein. (650 aa)
	A0A162TCR0	NDK domain-containing protein; Belongs to the NDK family. (110 aa)
	A0A162TIM4	PITH domain-containing protein. (206 aa)
	A0A162TJP5	UBIQUITIN_CONJUGAT_2 domain-containing protein. (354 aa)
	A0A162TLT1	Carbohydrate esterase family 4 protein. (394 aa)
	A0A162TVA8	Homeodomain-like DNA binding domain-containing transcription factor. (58 aa)
	A0A162U8D5	Uncharacterized protein. (428 aa)
	A0A162UBL3	Pex24p domain-containing protein. (324 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162PUA5	A0A162ZQW7	Uncharacterized protein.	Cdk-PCTAIRE; Belongs to the protein kinase superfamily.	0.671
A0A162PUA5	A0A163D695	Uncharacterized protein.	Protein kinase domain-containing protein.	0.671
A0A162PUA5	A0A167JNU8	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A162Q121	A0A163DBS7	CRAL-TRIO domain-containing protein.	PLD phosphodiesterase domain-containing protein.	0.418
A0A162TCR0	A0A162UXJ6	NDK domain-containing protein; Belongs to the NDK family.	RING-type domain-containing protein.	0.460
A0A162UXJ6	A0A162TCR0	RING-type domain-containing protein.	NDK domain-containing protein; Belongs to the NDK family.	0.460
A0A162ZQW7	A0A162PUA5	Cdk-PCTAIRE; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.671
A0A163D695	A0A162PUA5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.671
A0A163DBS7	A0A162Q121	PLD phosphodiesterase domain-containing protein.	CRAL-TRIO domain-containing protein.	0.418
A0A167JNU8	A0A162PUA5	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A167KL44	A0A167P743	TMF_TATA_bd domain-containing protein.	Uncharacterized protein.	0.724
A0A167P743	A0A167KL44	Uncharacterized protein.	TMF_TATA_bd domain-containing protein.	0.724