(5 nodes) U2-type catalytic step 1 spliceosome network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162ZIE5	Uncharacterized protein. (266 aa)
	A0A162WYS6	RRM domain-containing protein. (389 aa)
	A0A163ESU9	CCCH-type zinc finger transcription factor. (355 aa)
	A0A167QGU8	Uncharacterized protein. (498 aa)
	A0A167QWU6	Uncharacterized protein. (693 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162WYS6	A0A162ZIE5	RRM domain-containing protein.	Uncharacterized protein.	0.985
A0A162WYS6	A0A163ESU9	RRM domain-containing protein.	CCCH-type zinc finger transcription factor.	0.993
A0A162WYS6	A0A167QGU8	RRM domain-containing protein.	Uncharacterized protein.	0.992
A0A162WYS6	A0A167QWU6	RRM domain-containing protein.	Uncharacterized protein.	0.993
A0A162ZIE5	A0A162WYS6	Uncharacterized protein.	RRM domain-containing protein.	0.985
A0A162ZIE5	A0A163ESU9	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.954
A0A162ZIE5	A0A167QGU8	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A162ZIE5	A0A167QWU6	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A163ESU9	A0A162WYS6	CCCH-type zinc finger transcription factor.	RRM domain-containing protein.	0.993
A0A163ESU9	A0A162ZIE5	CCCH-type zinc finger transcription factor.	Uncharacterized protein.	0.954
A0A163ESU9	A0A167QGU8	CCCH-type zinc finger transcription factor.	Uncharacterized protein.	0.991
A0A163ESU9	A0A167QWU6	CCCH-type zinc finger transcription factor.	Uncharacterized protein.	0.999
A0A167QGU8	A0A162WYS6	Uncharacterized protein.	RRM domain-containing protein.	0.992
A0A167QGU8	A0A162ZIE5	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A167QGU8	A0A163ESU9	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.991
A0A167QGU8	A0A167QWU6	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A167QWU6	A0A162WYS6	Uncharacterized protein.	RRM domain-containing protein.	0.993
A0A167QWU6	A0A162ZIE5	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A167QWU6	A0A163ESU9	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.999
A0A167QWU6	A0A167QGU8	Uncharacterized protein.	Uncharacterized protein.	0.994