(105 nodes) Catalytic step 2 spliceosome network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162WEL2	Uncharacterized protein. (655 aa)
	A0A162WYS6	RRM domain-containing protein. (389 aa)
	A0A162X5T7	Uncharacterized protein. (471 aa)
	A0A162XEB8	Uncharacterized protein. (931 aa)
	A0A162XP87	Uncharacterized protein. (717 aa)
	A0A162XQI6	Small nuclear ribonucleoprotein G. (76 aa)
	A0A162YI48	Uncharacterized protein. (716 aa)
	A0A162YKD0	Uncharacterized protein. (674 aa)
	A0A162YKD3	Uncharacterized protein. (180 aa)
	A0A162ZF00	Uncharacterized protein. (460 aa)
	A0A162ZFV8	Uncharacterized protein. (607 aa)
	A0A162ZIE5	Uncharacterized protein. (266 aa)
	A0A162ZZU7	Tr-type G domain-containing protein. (981 aa)
	A0A163B835	RRM domain-containing protein. (122 aa)
	A0A163B9R4	Uncharacterized protein. (515 aa)
	A0A163BDG7	Uncharacterized protein. (779 aa)
	A0A163CZD0	Uncharacterized protein. (864 aa)
	A0A163D2S5	Uncharacterized protein. (720 aa)
	A0A163DZ89	Uncharacterized protein. (766 aa)
	A0A163E4S8	Uncharacterized protein. (656 aa)
	A0A163EQ32	MI domain-containing protein. (525 aa)
	A0A163ESU9	CCCH-type zinc finger transcription factor. (355 aa)
	A0A167J4R7	Uncharacterized protein. (792 aa)
	A0A167J8K0	Uncharacterized protein. (746 aa)
	A0A167JC21	Uncharacterized protein. (742 aa)
	A0A167JC72	Sm domain-containing protein. (134 aa)
	A0A167JFF2	Uncharacterized protein. (176 aa)
	A0A167JKF4	Uncharacterized protein. (620 aa)
	A0A167JL79	Uncharacterized protein. (795 aa)
	A0A167JUX7	Uncharacterized protein. (180 aa)
	A0A167JXQ9	Uncharacterized protein. (699 aa)
	A0A167K7A1	Uncharacterized protein. (172 aa)
	A0A167KKC2	Uncharacterized protein. (180 aa)
	A0A167KT70	Uncharacterized protein. (174 aa)
	A0A167L727	Uncharacterized protein. (170 aa)
	A0A167LA13	Uncharacterized protein. (265 aa)
	A0A167LT40	Uncharacterized protein. (316 aa)
	A0A167LT60	Uncharacterized protein. (795 aa)
	A0A167M6U0	Uncharacterized protein. (365 aa)
	A0A167M7U4	WD_REPEATS_REGION domain-containing protein. (296 aa)
	A0A167MID4	Uncharacterized protein. (268 aa)
	A0A167MJB2	PSP domain-containing protein. (566 aa)
	A0A167MUN3	Uncharacterized protein. (286 aa)
	A0A167MUZ1	Uncharacterized protein. (795 aa)
	A0A167N855	Uncharacterized protein. (157 aa)
	A0A167NYZ7	Uncharacterized protein. (657 aa)
	A0A167NZG0	Uncharacterized protein. (226 aa)
	A0A167PJH8	Uncharacterized protein. (566 aa)
	A0A167PTK4	Uncharacterized protein. (746 aa)
	A0A167Q453	Uncharacterized protein. (522 aa)
	A0A167Q495	Uncharacterized protein. (795 aa)
	A0A167QAR2	Uncharacterized protein. (690 aa)
	A0A167QAS9	Uncharacterized protein. (180 aa)
	A0A167QHP6	Uncharacterized protein. (317 aa)
	A0A167QQJ9	Matrin-type domain-containing protein. (236 aa)
	A0A167QTU3	Uncharacterized protein. (294 aa)
	A0A167QV35	Uncharacterized protein. (171 aa)
	A0A167QWU6	Uncharacterized protein. (693 aa)
	A0A167R9T8	Uncharacterized protein. (180 aa)
	A0A167RA69	Uncharacterized protein. (436 aa)
	A0A167LQM0	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (155 aa)
	A0A162N2E3	Uncharacterized protein. (792 aa)
	A0A162N2W8	Uncharacterized protein. (731 aa)
	A0A162N3L9	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1340 aa)
	A0A162N4I1	Uncharacterized protein. (463 aa)
	A0A162N558	Uncharacterized protein. (633 aa)
	A0A162N6D3	Uncharacterized protein. (484 aa)
	A0A162N9C9	Uncharacterized protein. (694 aa)
	A0A162NA17	Uncharacterized protein. (772 aa)
	A0A162NAR2	Uncharacterized protein. (204 aa)
	A0A162NBH4	Uncharacterized protein. (692 aa)
	A0A162NCL9	Uncharacterized protein. (717 aa)
	A0A162NFX4	Uncharacterized protein. (430 aa)
	A0A162NIJ6	Sm domain-containing protein. (172 aa)
	A0A162PLJ3	Uncharacterized protein. (720 aa)
	A0A162PQ22	Uncharacterized protein. (910 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (105 aa)
	A0A162Q382	Uncharacterized protein. (598 aa)
	A0A162Q3Y5	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (183 aa)
	A0A162Q804	Uncharacterized protein. (685 aa)
	A0A162SZP2	Uncharacterized protein. (638 aa)
	A0A162T0Z0	Uncharacterized protein. (431 aa)
	A0A162T259	Uncharacterized protein. (176 aa)
	A0A162T8T2	Uncharacterized protein. (720 aa)
	A0A162TFQ3	Uncharacterized protein. (621 aa)
	A0A162TGZ3	Uncharacterized protein. (720 aa)
	A0A162TK72	Uncharacterized protein. (771 aa)
	A0A162TL40	Uncharacterized protein. (720 aa)
	A0A162TS38	WD_REPEATS_REGION domain-containing protein. (582 aa)
	A0A162TU10	Uncharacterized protein. (715 aa)
	A0A162TUC0	Pinin_SDK_memA domain-containing protein. (221 aa)
	A0A162TX73	Uncharacterized protein. (180 aa)
	A0A162U367	Uncharacterized protein. (722 aa)
	A0A162U7D0	Uncharacterized protein. (207 aa)
	A0A162UBV8	Uncharacterized protein. (779 aa)
	A0A162UIL5	WD_REPEATS_REGION domain-containing protein. (360 aa)
	A0A162URN8	F-box domain-containing protein. (460 aa)
	A0A162UUL9	Uncharacterized protein. (652 aa)
	A0A162UZU5	Uncharacterized protein. (795 aa)
	A0A162V1A7	Uncharacterized protein. (842 aa)
	A0A162V1C8	Uncharacterized protein. (640 aa)
	A0A162V343	Uncharacterized protein. (422 aa)
	A0A162V3A6	F-box domain-containing protein. (349 aa)
	A0A162VAS8	Uncharacterized protein. (720 aa)
	A0A162W8H2	Uncharacterized protein. (110 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162N2E3	A0A162N3L9	A0A162N2E3	A0A162N3L9	Uncharacterized protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.444
A0A162N2E3	A0A162N558	A0A162N2E3	A0A162N558	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A162N2E3	A0A162NIJ6	A0A162N2E3	A0A162NIJ6	Uncharacterized protein.	Sm domain-containing protein.	0.410
A0A162N2E3	A0A162Q382	A0A162N2E3	A0A162Q382	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A162N2E3	A0A162Q3Y5	A0A162N2E3	A0A162Q3Y5	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.614
A0A162N2E3	A0A162UIL5	A0A162N2E3	A0A162UIL5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.414
A0A162N2E3	A0A162URN8	A0A162N2E3	A0A162URN8	Uncharacterized protein.	F-box domain-containing protein.	0.410
A0A162N2E3	A0A162V3A6	A0A162N2E3	A0A162V3A6	Uncharacterized protein.	F-box domain-containing protein.	0.410
A0A162N2E3	A0A162XQI6	A0A162N2E3	A0A162XQI6	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.410
A0A162N2E3	A0A162ZFV8	A0A162N2E3	A0A162ZFV8	Uncharacterized protein.	Uncharacterized protein.	0.414
A0A162N2E3	A0A162ZIE5	A0A162N2E3	A0A162ZIE5	Uncharacterized protein.	Uncharacterized protein.	0.678
A0A162N2E3	A0A162ZZU7	A0A162N2E3	A0A162ZZU7	Uncharacterized protein.	Tr-type G domain-containing protein.	0.471
A0A162N2E3	A0A163EQ32	A0A162N2E3	A0A163EQ32	Uncharacterized protein.	MI domain-containing protein.	0.690
A0A162N2E3	A0A163ESU9	A0A162N2E3	A0A163ESU9	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.467
A0A162N2E3	A0A167JC21	A0A162N2E3	A0A167JC21	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A162N2E3	A0A167LA13	A0A162N2E3	A0A167LA13	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A162N2E3	A0A167LQM0	A0A162N2E3	A0A167LQM0	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.671
A0A162N2E3	A0A167MID4	A0A162N2E3	A0A167MID4	Uncharacterized protein.	Uncharacterized protein.	0.464
A0A162N2E3	A0A167NZG0	A0A162N2E3	A0A167NZG0	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A162N2E3	A0A167QHP6	A0A162N2E3	A0A167QHP6	Uncharacterized protein.	Uncharacterized protein.	0.486