(60 nodes) protein-DNA complex subunit organization network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167PVT9	Helicase ATP-binding domain-containing protein. (339 aa)
	A0A162N341	Homeodomain-like DNA binding domain-containing transcription factor. (352 aa)
	A0A162N8U1	Rad51 domain-containing protein. (57 aa)
	A0A162NBQ7	Transcription factor CBF. (89 aa)
	A0A162NCC9	Histone H2B; Belongs to the histone H2B family. (148 aa)
	A0A162NHD8	Histone H2A; Belongs to the histone H2A family. (130 aa)
	A0A162NHU9	Cullin; Belongs to the cullin family. (755 aa)
	A0A162PIM8	Uncharacterized protein. (133 aa)
	A0A162PSS2	Homeodomain-like DNA binding domain-containing transcription factor. (1189 aa)
	A0A162PUG2	Peptidylprolyl isomerase. (91 aa)
	A0A162PWG7	Uncharacterized protein. (383 aa)
	A0A162QA03	Uncharacterized protein. (696 aa)
	A0A162T9V5	Homeodomain-like DNA binding domain-containing transcription factor. (1644 aa)
	A0A162TIK7	Uncharacterized protein. (98 aa)
	A0A162TQ75	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (108 aa)
	A0A162TV25	Uncharacterized protein. (700 aa)
	A0A162TYL6	Uncharacterized protein. (303 aa)
	A0A162TZL1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A162U1N4	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (386 aa)
	A0A162U7N1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A162UBR9	Uncharacterized protein. (326 aa)
	A0A162UGY5	TFIID_20kDa domain-containing protein. (103 aa)
	A0A162UM41	Uncharacterized protein. (143 aa)
	A0A162WLU0	Histone H2B; Belongs to the histone H2B family. (126 aa)
	A0A162XIH2	Uncharacterized protein. (148 aa)
	A0A162XN51	Uncharacterized protein. (243 aa)
	A0A162YDM4	Uncharacterized protein. (384 aa)
	A0A162YHE4	TFIIB-type domain-containing protein. (293 aa)
	A0A162ZP12	RanBP2-type domain-containing protein. (220 aa)
	A0A162ZW26	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (96 aa)
	A0A163ACA2	HIT-type domain-containing protein. (150 aa)
	A0A163AF23	Histone H2B; Belongs to the histone H2B family. (126 aa)
	A0A163AKQ3	TAFII28 domain-containing protein. (118 aa)
	RdRP-3	RNA-dependent RNA polymerase. (1200 aa)
	A0A163D2C4	YL1_C domain-containing protein. (214 aa)
	A0A163D5P0	Histone H2B; Belongs to the histone H2B family. (125 aa)
	A0A167JHR9	HTH TFE/IIEalpha-type domain-containing protein. (430 aa)
	A0A167JIV2	WD_REPEATS_REGION domain-containing protein. (323 aa)
	A0A167JLV2	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (420 aa)
	A0A167L382	Cell division control protein; Belongs to the CDC6/cdc18 family. (533 aa)
	A0A167M803	Uncharacterized protein; Belongs to the actin family. (388 aa)
	A0A167ML90	Uncharacterized protein. (129 aa)
	A0A167MVT5	TFIIB-type domain-containing protein. (338 aa)
	A0A167MYD1	Uncharacterized protein. (612 aa)
	A0A167NUK9	S1 motif domain-containing protein. (1318 aa)
	A0A167NW77	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (124 aa)
	A0A167P417	Rad51 domain-containing protein. (100 aa)
	A0A167PPP5	Homeodomain-like DNA binding domain-containing transcription factor. (442 aa)
	A0A167PTU1	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (112 aa)
	A0A167PVW0	Helicase C-terminal domain-containing protein. (104 aa)
	RdRP-2	RNA-dependent RNA polymerase. (1278 aa)
	A0A167Q5G2	Transcription factor CBF. (143 aa)
	A0A167QEA1	Uncharacterized protein. (212 aa)
	A0A167QNX4	Histone H2A; Belongs to the histone H2A family. (134 aa)
	A0A167QS25	Uncharacterized protein. (509 aa)
	A0A167QTH9	DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (333 aa)
	A0A167QZ49	Helicase C-terminal domain-containing protein. (94 aa)
	A0A167R083	Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family. (229 aa)
	A0A167R3N0	CENP-T_C domain-containing protein. (575 aa)
	A0A167RGN6	Uncharacterized protein. (1290 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162N341	A0A162TV25	A0A162N341	A0A162TV25	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.428
A0A162N341	A0A162TYL6	A0A162N341	A0A162TYL6	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.780
A0A162N341	A0A167QS25	A0A162N341	A0A167QS25	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.999
A0A162N8U1	A0A162PIM8	A0A162N8U1	A0A162PIM8	Rad51 domain-containing protein.	Uncharacterized protein.	0.963
A0A162N8U1	A0A162PSS2	A0A162N8U1	A0A162PSS2	Rad51 domain-containing protein.	Homeodomain-like DNA binding domain-containing transcription factor.	0.440
A0A162N8U1	A0A162PWG7	A0A162N8U1	A0A162PWG7	Rad51 domain-containing protein.	Uncharacterized protein.	0.517
A0A162N8U1	A0A162QA03	A0A162N8U1	A0A162QA03	Rad51 domain-containing protein.	Uncharacterized protein.	0.496
A0A162N8U1	A0A162T9V5	A0A162N8U1	A0A162T9V5	Rad51 domain-containing protein.	Homeodomain-like DNA binding domain-containing transcription factor.	0.440
A0A162N8U1	A0A162TQ75	A0A162N8U1	A0A162TQ75	Rad51 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.468
A0A162N8U1	A0A162TYL6	A0A162N8U1	A0A162TYL6	Rad51 domain-containing protein.	Uncharacterized protein.	0.440
A0A162N8U1	A0A162TZL1	A0A162N8U1	A0A162TZL1	Rad51 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.468
A0A162N8U1	A0A162XIH2	A0A162N8U1	A0A162XIH2	Rad51 domain-containing protein.	Uncharacterized protein.	0.610
A0A162N8U1	A0A162XN51	A0A162N8U1	A0A162XN51	Rad51 domain-containing protein.	Uncharacterized protein.	0.492
A0A162N8U1	A0A167L382	A0A162N8U1	A0A167L382	Rad51 domain-containing protein.	Cell division control protein; Belongs to the CDC6/cdc18 family.	0.671
A0A162N8U1	A0A167MYD1	A0A162N8U1	A0A167MYD1	Rad51 domain-containing protein.	Uncharacterized protein.	0.776
A0A162N8U1	A0A167NW77	A0A162N8U1	A0A167NW77	Rad51 domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.468
A0A162N8U1	A0A167P417	A0A162N8U1	A0A167P417	Rad51 domain-containing protein.	Rad51 domain-containing protein.	0.970
A0A162N8U1	A0A167PVT9	A0A162N8U1	A0A167PVT9	Rad51 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.440
A0A162N8U1	A0A167PVW0	A0A162N8U1	A0A167PVW0	Rad51 domain-containing protein.	Helicase C-terminal domain-containing protein.	0.440
A0A162N8U1	A0A167QZ49	A0A162N8U1	A0A167QZ49	Rad51 domain-containing protein.	Helicase C-terminal domain-containing protein.	0.440