(8 nodes) Nucleolar ribonuclease P complex network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167KWY1	Uncharacterized protein. (267 aa)
	A0A162TTP2	Uncharacterized protein. (234 aa)
	A0A163CWE3	Uncharacterized protein. (211 aa)
	A0A163DLU9	Uncharacterized protein. (784 aa)
	A0A167KYG7	Uncharacterized protein. (159 aa)
	A0A167M3I7	Uncharacterized protein. (125 aa)
	A0A167MBR6	Uncharacterized protein. (157 aa)
	A0A167QJ69	Uncharacterized protein. (813 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162TTP2	A0A163CWE3	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A162TTP2	A0A163DLU9	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A162TTP2	A0A167KYG7	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A162TTP2	A0A167MBR6	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A162TTP2	A0A167QJ69	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A163CWE3	A0A162TTP2	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A163CWE3	A0A163DLU9	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A163CWE3	A0A167KWY1	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A163CWE3	A0A167KYG7	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A163CWE3	A0A167M3I7	Uncharacterized protein.	Uncharacterized protein.	0.746
A0A163CWE3	A0A167QJ69	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A163DLU9	A0A162TTP2	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A163DLU9	A0A163CWE3	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A163DLU9	A0A167KWY1	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A163DLU9	A0A167KYG7	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A163DLU9	A0A167MBR6	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A167KWY1	A0A163CWE3	Uncharacterized protein.	Uncharacterized protein.	0.974
A0A167KWY1	A0A163DLU9	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A167KWY1	A0A167KYG7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A167KWY1	A0A167MBR6	Uncharacterized protein.	Uncharacterized protein.	0.989