(51 nodes) Extrinsic component of membrane network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	QCR1	Ubiquinol-cytochrome c reductase core subunit 1; Belongs to the peptidase M16 family. (1026 aa)
	A0A167MB48	zf-Mss51 domain-containing protein. (438 aa)
	A0A167M2P9	PIPK domain-containing protein. (1466 aa)
	A0A167M0C5	Uncharacterized protein. (1120 aa)
	A0A167LUR5	LNS2 domain-containing protein. (559 aa)
	A0A167LEA4	SAC domain-containing protein. (686 aa)
	A0A167LCN8	COX assembly mitochondrial protein; Required for mitochondrial cytochrome c oxidase (COX) assembly and respiration; Belongs to the CMC family. (102 aa)
	A0A167KZJ8	PIPK domain-containing protein. (1591 aa)
	A0A167KWM3	Uncharacterized protein. (222 aa)
	A0A167K9C3	Erf4 domain-containing protein. (185 aa)
	A0A167K3C2	Actin-related protein 2/3 complex subunit 5; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Arp2/3 complex plays a critical role in the control of cell morphogenesis via the modulation of cell polarity development. (155 aa)
	A0A167JJ36	BEACH domain-containing protein. (499 aa)
	A0A167JJ34	ANAPC4_WD40 domain-containing protein. (157 aa)
	QCR1_3	Ubiquinol-cytochrome c reductase core subunit 2; Belongs to the peptidase M16 family. (1096 aa)
	A0A163EBZ3	UBX domain-containing protein. (240 aa)
	A0A163EAI9	Uncharacterized protein. (348 aa)
	A0A163E4Z8	Uncharacterized protein. (732 aa)
	A0A163DYJ7	AMP_N domain-containing protein. (515 aa)
	A0A163DCX7	Uncharacterized protein. (692 aa)
	A0A163CW18	G protein gamma subunit. (69 aa)
	Gpb1	G protein beta subunit. (350 aa)
	A0A163B476	Uncharacterized protein. (350 aa)
	A0A162ZDX5	Uncharacterized protein. (631 aa)
	A0A162ZAB8	Methyltransf_11 domain-containing protein. (327 aa)
	A0A162YHG8	Uncharacterized protein. (87 aa)
	A0A162YFQ0	Uncharacterized protein. (387 aa)
	Gpb2	G protein beta subunit. (347 aa)
	A0A162V315	Uncharacterized protein. (392 aa)
	Gpb3	G protein beta subunit. (357 aa)
	A0A162UUU3	Uncharacterized protein. (193 aa)
	A0A162USK2	Uncharacterized protein. (614 aa)
	A0A162TYY4	OBG-type G domain-containing protein. (475 aa)
	A0A162THX6	BSD domain-containing protein. (270 aa)
	ALG13	UDP-N-acetylglucosamine transferase subunit ALG13; Involved in protein N-glycosylation. Essential for the second step of the dolichol-linked oligosaccharide pathway. (167 aa)
	A0A162Q1X8	PIPK domain-containing protein. (1554 aa)
	A0A162PW38	Uncharacterized protein. (296 aa)
	A0A162PVT6	FYVE-type domain-containing protein. (242 aa)
	A0A162PUY9	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1230 aa)
	A0A162PL32	Uncharacterized protein. (676 aa)
	A0A162NIT7	G protein gamma subunit. (75 aa)
	A0A162NHE9	G protein gamma subunit. (87 aa)
	Gpb4	G protein beta subunit. (346 aa)
	A0A162N384	Uncharacterized protein. (958 aa)
	A0A167RF15	ABC1 domain-containing protein. (439 aa)
	A0A167RDD1	Uncharacterized protein. (309 aa)
	A0A167R6J7	Uncharacterized protein. (533 aa)
	A0A167QK38	G protein beta subunit. (348 aa)
	QCR1_4	Ubiquinol-cytochrome c reductase core subunit 1; Belongs to the peptidase M16 family. (1079 aa)
	A0A167P7Z3	Uncharacterized protein. (235 aa)
	A0A167N250	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. (313 aa)
	Gpg2	G protein gamma subunit. (80 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162N384	A0A162PL32	A0A162N384	A0A162PL32	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A162N384	A0A162PVT6	A0A162N384	A0A162PVT6	Uncharacterized protein.	FYVE-type domain-containing protein.	0.896
A0A162N384	A0A162Q1X8	A0A162N384	A0A162Q1X8	Uncharacterized protein.	PIPK domain-containing protein.	0.896
A0A162N384	A0A167KZJ8	A0A162N384	A0A167KZJ8	Uncharacterized protein.	PIPK domain-containing protein.	0.896
A0A162N384	A0A167LEA4	A0A162N384	A0A167LEA4	Uncharacterized protein.	SAC domain-containing protein.	0.974
A0A162N384	A0A167M2P9	A0A162N384	A0A167M2P9	Uncharacterized protein.	PIPK domain-containing protein.	0.896
A0A162NHE9	A0A162NIT7	A0A162NHE9	A0A162NIT7	G protein gamma subunit.	G protein gamma subunit.	0.635
A0A162NHE9	A0A163CW18	A0A162NHE9	A0A163CW18	G protein gamma subunit.	G protein gamma subunit.	0.636
A0A162NHE9	A0A167QK38	A0A162NHE9	A0A167QK38	G protein gamma subunit.	G protein beta subunit.	0.804
A0A162NHE9	Gpb1	A0A162NHE9	A0A163BE19	G protein gamma subunit.	G protein beta subunit.	0.804
A0A162NHE9	Gpb2	A0A162NHE9	A0A162V718	G protein gamma subunit.	G protein beta subunit.	0.804
A0A162NHE9	Gpb3	A0A162NHE9	A0A162V109	G protein gamma subunit.	G protein beta subunit.	0.804
A0A162NHE9	Gpb4	A0A162NHE9	A0A162N6W5	G protein gamma subunit.	G protein beta subunit.	0.804
A0A162NIT7	A0A162NHE9	A0A162NIT7	A0A162NHE9	G protein gamma subunit.	G protein gamma subunit.	0.635
A0A162NIT7	A0A167QK38	A0A162NIT7	A0A167QK38	G protein gamma subunit.	G protein beta subunit.	0.869
A0A162NIT7	Gpb1	A0A162NIT7	A0A163BE19	G protein gamma subunit.	G protein beta subunit.	0.869
A0A162NIT7	Gpb2	A0A162NIT7	A0A162V718	G protein gamma subunit.	G protein beta subunit.	0.869
A0A162NIT7	Gpb3	A0A162NIT7	A0A162V109	G protein gamma subunit.	G protein beta subunit.	0.869
A0A162NIT7	Gpb4	A0A162NIT7	A0A162N6W5	G protein gamma subunit.	G protein beta subunit.	0.869
A0A162NIT7	Gpg2	A0A162NIT7	A0A167MSS9	G protein gamma subunit.	G protein gamma subunit.	0.630