(15 nodes) Preribosome, small subunit precursor network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162N504	Uncharacterized protein. (335 aa)
	A0A162NE93	Uncharacterized protein. (313 aa)
	A0A162TMJ8	Uncharacterized protein. (157 aa)
	A0A162TPF9	Uncharacterized protein. (183 aa)
	A0A162XV83	Uncharacterized protein. (224 aa)
	A0A163B148	Uncharacterized protein. (583 aa)
	A0A163D4D9	DUF663 domain-containing protein. (160 aa)
	A0A163DR42	Uncharacterized protein. (463 aa)
	A0A167L947	Uncharacterized protein. (256 aa)
	A0A167L961	Uncharacterized protein. (168 aa)
	A0A167MA83	CBF domain-containing protein. (482 aa)
	A0A167MQ63	RIO domain-containing protein. (322 aa)
	A0A167NUQ6	DRIM domain-containing protein. (1769 aa)
	A0A167QD21	RRM domain-containing protein. (149 aa)
	A0A167R3X1	Uncharacterized protein. (237 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N504	A0A162TMJ8	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A162N504	A0A162XV83	Uncharacterized protein.	Uncharacterized protein.	0.958
A0A162N504	A0A163B148	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A162N504	A0A163D4D9	Uncharacterized protein.	DUF663 domain-containing protein.	0.999
A0A162N504	A0A167L947	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162N504	A0A167L961	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162N504	A0A167MA83	Uncharacterized protein.	CBF domain-containing protein.	0.998
A0A162N504	A0A167MQ63	Uncharacterized protein.	RIO domain-containing protein.	0.997
A0A162N504	A0A167NUQ6	Uncharacterized protein.	DRIM domain-containing protein.	0.958
A0A162N504	A0A167QD21	Uncharacterized protein.	RRM domain-containing protein.	0.924
A0A162N504	A0A167R3X1	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A162TMJ8	A0A162N504	Uncharacterized protein.	Uncharacterized protein.	0.860
A0A162TMJ8	A0A162TPF9	Uncharacterized protein.	Uncharacterized protein.	0.423
A0A162TMJ8	A0A162XV83	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A162TMJ8	A0A163B148	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A162TMJ8	A0A163D4D9	Uncharacterized protein.	DUF663 domain-containing protein.	0.783
A0A162TMJ8	A0A167L947	Uncharacterized protein.	Uncharacterized protein.	0.753
A0A162TMJ8	A0A167L961	Uncharacterized protein.	Uncharacterized protein.	0.753
A0A162TMJ8	A0A167MA83	Uncharacterized protein.	CBF domain-containing protein.	0.913
A0A162TMJ8	A0A167MQ63	Uncharacterized protein.	RIO domain-containing protein.	0.621