(15 nodes) Nuclear replication fork network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167R3V1	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (495 aa)
	A0A167QQI9	Uncharacterized protein. (751 aa)
	A0A167Q6P8	AAA domain-containing protein. (911 aa)
	A0A167NML8	Chromosome segregation in meiosis protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (328 aa)
	A0A167NM89	DNA polymerase. (1151 aa)
	A0A167L178	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (601 aa)
	A0A167KHZ5	Uncharacterized protein. (430 aa)
	A0A163DED6	WD_REPEATS_REGION domain-containing protein. (828 aa)
	A0A163D1U8	DNA polymerase. (1072 aa)
	A0A162XDI3	Glycosyltransferase family 8 protein. (295 aa)
	A0A162W8K7	Zf-primase domain-containing protein. (439 aa)
	A0A162U9H3	Uncharacterized protein. (422 aa)
	A0A162TTU4	Uncharacterized protein. (314 aa)
	A0A162NDE4	Uncharacterized protein. (249 aa)
	A0A162N5D9	Glycosyltransferase family 8 protein. (286 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N5D9	A0A163D1U8	Glycosyltransferase family 8 protein.	DNA polymerase.	0.878
A0A162N5D9	A0A167KHZ5	Glycosyltransferase family 8 protein.	Uncharacterized protein.	0.889
A0A162N5D9	A0A167L178	Glycosyltransferase family 8 protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.501
A0A162N5D9	A0A167NM89	Glycosyltransferase family 8 protein.	DNA polymerase.	0.778
A0A162N5D9	A0A167NML8	Glycosyltransferase family 8 protein.	Chromosome segregation in meiosis protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.429
A0A162N5D9	A0A167QQI9	Glycosyltransferase family 8 protein.	Uncharacterized protein.	0.413
A0A162N5D9	A0A167R3V1	Glycosyltransferase family 8 protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.667
A0A162NDE4	A0A162U9H3	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A162NDE4	A0A162W8K7	Uncharacterized protein.	Zf-primase domain-containing protein.	0.734
A0A162NDE4	A0A163D1U8	Uncharacterized protein.	DNA polymerase.	0.856
A0A162NDE4	A0A163DED6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.400
A0A162NDE4	A0A167KHZ5	Uncharacterized protein.	Uncharacterized protein.	0.792
A0A162NDE4	A0A167L178	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.999
A0A162NDE4	A0A167NM89	Uncharacterized protein.	DNA polymerase.	0.918
A0A162NDE4	A0A167NML8	Uncharacterized protein.	Chromosome segregation in meiosis protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.926
A0A162NDE4	A0A167Q6P8	Uncharacterized protein.	AAA domain-containing protein.	0.678
A0A162NDE4	A0A167QQI9	Uncharacterized protein.	Uncharacterized protein.	0.885
A0A162NDE4	A0A167R3V1	Uncharacterized protein.	DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family.	0.958
A0A162TTU4	A0A162W8K7	Uncharacterized protein.	Zf-primase domain-containing protein.	0.682
A0A162TTU4	A0A163D1U8	Uncharacterized protein.	DNA polymerase.	0.820