(12 nodes) Catalytic step 2 spliceosome network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167QWU6	Uncharacterized protein. (693 aa)
	A0A162TS38	WD_REPEATS_REGION domain-containing protein. (582 aa)
	A0A162XP87	Uncharacterized protein. (717 aa)
	A0A162ZZU7	Tr-type G domain-containing protein. (981 aa)
	A0A163E4S8	Uncharacterized protein. (656 aa)
	A0A162NFX4	Uncharacterized protein. (430 aa)
	A0A162N558	Uncharacterized protein. (633 aa)
	A0A163ESU9	CCCH-type zinc finger transcription factor. (355 aa)
	A0A167JC21	Uncharacterized protein. (742 aa)
	A0A167LA13	Uncharacterized protein. (265 aa)
	A0A167M7U4	WD_REPEATS_REGION domain-containing protein. (296 aa)
	A0A167QHP6	Uncharacterized protein. (317 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N558	A0A162NFX4	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A162N558	A0A162TS38	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A162N558	A0A162XP87	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A162N558	A0A162ZZU7	Uncharacterized protein.	Tr-type G domain-containing protein.	0.710
A0A162N558	A0A163ESU9	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.725
A0A162N558	A0A167JC21	Uncharacterized protein.	Uncharacterized protein.	0.750
A0A162N558	A0A167LA13	Uncharacterized protein.	Uncharacterized protein.	0.705
A0A162N558	A0A167QHP6	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A162N558	A0A167QWU6	Uncharacterized protein.	Uncharacterized protein.	0.806
A0A162NFX4	A0A162N558	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A162NFX4	A0A162ZZU7	Uncharacterized protein.	Tr-type G domain-containing protein.	0.471
A0A162NFX4	A0A163ESU9	Uncharacterized protein.	CCCH-type zinc finger transcription factor.	0.467
A0A162NFX4	A0A167JC21	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A162NFX4	A0A167LA13	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A162NFX4	A0A167QHP6	Uncharacterized protein.	Uncharacterized protein.	0.486
A0A162NFX4	A0A167QWU6	Uncharacterized protein.	Uncharacterized protein.	0.494
A0A162TS38	A0A162N558	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.995
A0A162TS38	A0A162ZZU7	WD_REPEATS_REGION domain-containing protein.	Tr-type G domain-containing protein.	0.993
A0A162TS38	A0A163E4S8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.731
A0A162TS38	A0A163ESU9	WD_REPEATS_REGION domain-containing protein.	CCCH-type zinc finger transcription factor.	0.994