(8 nodes) HAT (Half-A-TPR) repeat network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167R6P1	TPR_REGION domain-containing protein. (598 aa)
	A0A167JC21	Uncharacterized protein. (742 aa)
	A0A167Q3B2	Uncharacterized protein. (598 aa)
	A0A167QTH7	Uncharacterized protein. (1451 aa)
	A0A167QWU6	Uncharacterized protein. (693 aa)
	A0A162UP04	Uncharacterized protein. (786 aa)
	A0A162XTY7	Uncharacterized protein. (674 aa)
	A0A162PQ22	Uncharacterized protein. (910 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162PQ22	A0A162UP04	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A162PQ22	A0A167JC21	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A162PQ22	A0A167QWU6	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A162UP04	A0A162PQ22	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A162UP04	A0A167QTH7	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A162XTY7	A0A167QTH7	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A167JC21	A0A162PQ22	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A167JC21	A0A167QWU6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167QTH7	A0A162UP04	Uncharacterized protein.	Uncharacterized protein.	0.432
A0A167QTH7	A0A162XTY7	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A167QWU6	A0A162PQ22	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A167QWU6	A0A167JC21	Uncharacterized protein.	Uncharacterized protein.	0.999