(52 nodes) Nonhomologous End-Joining (NHEJ) network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A167LHD9	Uncharacterized protein. (380 aa)
	A0A162N8V3	Uncharacterized protein. (679 aa)
	A0A162NCC9	Histone H2B; Belongs to the histone H2B family. (148 aa)
	A0A162NCP2	Cyclin. (342 aa)
	A0A162NE62	Uncharacterized protein. (756 aa)
	A0A162NG38	Uncharacterized protein. (240 aa)
	A0A162PRI3	Uncharacterized protein. (357 aa)
	A0A162PZE1	BTB domain-containing protein. (497 aa)
	A0A162PZU8	Cyclin. (189 aa)
	A0A162Q3E2	Cyclin. (173 aa)
	A0A162T7G1	Cyclin. (236 aa)
	A0A162TGH1	Cyclin. (176 aa)
	A0A162TRM8	FHA domain-containing protein. (159 aa)
	A0A162TS26	Cyclin. (504 aa)
	A0A162UEE2	Cyclin. (249 aa)
	A0A162UHH3	Cyclin. (64 aa)
	A0A162V6U8	Cyclin. (212 aa)
	A0A162VAT3	Cyclin. (102 aa)
	A0A162WLU0	Histone H2B; Belongs to the histone H2B family. (126 aa)
	A0A162XBM9	Cyclin. (375 aa)
	A0A162XG32	Uncharacterized protein. (213 aa)
	A0A162XP29	Cyclin. (298 aa)
	A0A162Y1W0	Cyclin. (197 aa)
	A0A162ZF51	Cyclin N-terminal domain-containing protein. (172 aa)
	A0A163AF23	Histone H2B; Belongs to the histone H2B family. (126 aa)
	A0A163AWM6	FHA domain-containing protein. (422 aa)
	A0A163D0E4	Uncharacterized protein. (172 aa)
	A0A163D5P0	Histone H2B; Belongs to the histone H2B family. (125 aa)
	A0A163DNI4	Uncharacterized protein. (205 aa)
	A0A167JJW8	Uncharacterized protein. (186 aa)
	A0A167KJD1	Cyclin. (172 aa)
	A0A167KZU6	Uncharacterized protein. (250 aa)
	A0A167KZV4	Uncharacterized protein. (264 aa)
	A0A167L1L5	Cyclin. (255 aa)
	A0A167L2N0	Cyclin; Belongs to the cyclin family. (179 aa)
	A0A167L3U7	Cyclin. (63 aa)
	A0A167LCG4	MPN domain-containing protein. (452 aa)
	A0A167MGL8	Cyclin. (207 aa)
	A0A167NHI8	Cyclin. (149 aa)
	A0A167NZV0	Uncharacterized protein. (489 aa)
	A0A167P035	Cyclin. (141 aa)
	A0A167P2N0	Cyclin. (323 aa)
	A0A167P6R1	Cyclin. (356 aa)
	A0A167PAC5	Cyclin. (181 aa)
	A0A167PGU5	Cyclin. (183 aa)
	A0A167Q7L1	Cyclin; Belongs to the cyclin family. (200 aa)
	A0A167QM58	Uncharacterized protein. (148 aa)
	A0A167QUV1	Cyclin. (572 aa)
	A0A167QV90	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4023 aa)
	A0A167R0C6	Cyclin. (178 aa)
	A0A167R601	Uncharacterized protein. (517 aa)
	A0A167M3T4	Cyclin. (317 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N8V3	A0A162NE62	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162N8V3	A0A163D0E4	Uncharacterized protein.	Uncharacterized protein.	0.550
A0A162NCC9	A0A162NE62	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.642
A0A162NCC9	A0A167QV90	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.657
A0A162NCP2	A0A167QV90	Cyclin.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.441
A0A162NE62	A0A162N8V3	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A162NCC9	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.642
A0A162NE62	A0A162NG38	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A162PRI3	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A162TRM8	Uncharacterized protein.	FHA domain-containing protein.	0.767
A0A162NE62	A0A162WLU0	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.642
A0A162NE62	A0A162XG32	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A163AF23	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.642
A0A162NE62	A0A163AWM6	Uncharacterized protein.	FHA domain-containing protein.	0.767
A0A162NE62	A0A163D0E4	Uncharacterized protein.	Uncharacterized protein.	0.758
A0A162NE62	A0A163D5P0	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.642
A0A162NE62	A0A163DNI4	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A167JJW8	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A167KZU6	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A162NE62	A0A167KZV4	Uncharacterized protein.	Uncharacterized protein.	0.767