(34 nodes) RNA Polymerase III Transcription Initiation network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162TC68	Uncharacterized protein. (62 aa)
	A0A162N4C7	Uncharacterized protein. (497 aa)
	A0A162N341	Homeodomain-like DNA binding domain-containing transcription factor. (352 aa)
	A0A162TY78	Uncharacterized protein. (209 aa)
	A0A162UGM8	Uncharacterized protein. (146 aa)
	A0A162WLI3	Tau95 domain-containing protein. (284 aa)
	A0A162XC13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1392 aa)
	A0A162XPX5	Uncharacterized protein. (241 aa)
	A0A162ZY31	Uncharacterized protein. (171 aa)
	A0A162Q8J6	Uncharacterized protein. (306 aa)
	A0A163DJH1	Uncharacterized protein. (406 aa)
	A0A163DSQ4	Uncharacterized protein. (544 aa)
	A0A163ERS1	ENDO3c domain-containing protein. (306 aa)
	A0A167JQJ2	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (222 aa)
	A0A167KE48	Uncharacterized protein. (821 aa)
	A0A167KF55	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1149 aa)
	A0A167KXE5	Uncharacterized protein. (547 aa)
	A0A167LD35	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (542 aa)
	A0A167LGR7	TPR_REGION domain-containing protein. (150 aa)
	A0A167LGT3	Uncharacterized protein. (128 aa)
	A0A167M829	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (281 aa)
	A0A167MAP9	Transcription factor TFIID, C-terminal, TATA-box binding transcription factor. (223 aa)
	A0A167NAY7	Uncharacterized protein. (122 aa)
	A0A162Q570	Transcription factor TFIID, C-terminal, TATA-box binding transcription factor. (221 aa)
	A0A167QXW1	Uncharacterized protein. (58 aa)
	A0A167P286	RPOLD domain-containing protein. (349 aa)
	A0A167P3A9	Uncharacterized protein. (490 aa)
	A0A167QSF8	Uncharacterized protein. (479 aa)
	A0A167QS25	Uncharacterized protein. (509 aa)
	A0A162PQ32	RPOL4c domain-containing protein. (150 aa)
	A0A162NHM1	Uncharacterized protein. (211 aa)
	A0A162NH54	Uncharacterized protein. (58 aa)
	A0A162NEP2	Uncharacterized protein. (263 aa)
	A0A162TSV0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (107 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N341	A0A162NEP2	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.814
A0A162N341	A0A162NH54	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.886
A0A162N341	A0A162NHM1	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.973
A0A162N341	A0A162PQ32	Homeodomain-like DNA binding domain-containing transcription factor.	RPOL4c domain-containing protein.	0.978
A0A162N341	A0A162Q570	Homeodomain-like DNA binding domain-containing transcription factor.	Transcription factor TFIID, C-terminal, TATA-box binding transcription factor.	0.968
A0A162N341	A0A162Q8J6	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.982
A0A162N341	A0A162TC68	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.901
A0A162N341	A0A162TSV0	Homeodomain-like DNA binding domain-containing transcription factor.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.909
A0A162N341	A0A162TY78	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.928
A0A162N341	A0A162WLI3	Homeodomain-like DNA binding domain-containing transcription factor.	Tau95 domain-containing protein.	0.814
A0A162N341	A0A162XC13	Homeodomain-like DNA binding domain-containing transcription factor.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
A0A162N341	A0A162ZY31	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.958
A0A162N341	A0A167JQJ2	Homeodomain-like DNA binding domain-containing transcription factor.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.944
A0A162N341	A0A167KF55	Homeodomain-like DNA binding domain-containing transcription factor.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.976
A0A162N341	A0A167KXE5	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.728
A0A162N341	A0A167LD35	Homeodomain-like DNA binding domain-containing transcription factor.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.978
A0A162N341	A0A167LGR7	Homeodomain-like DNA binding domain-containing transcription factor.	TPR_REGION domain-containing protein.	0.937
A0A162N341	A0A167LGT3	Homeodomain-like DNA binding domain-containing transcription factor.	Uncharacterized protein.	0.937
A0A162N341	A0A167M829	Homeodomain-like DNA binding domain-containing transcription factor.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.985
A0A162N341	A0A167MAP9	Homeodomain-like DNA binding domain-containing transcription factor.	Transcription factor TFIID, C-terminal, TATA-box binding transcription factor.	0.968