(4 nodes) 3 exoribonuclease family, domain 2 network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162N8A9	Uncharacterized protein. (303 aa)
	A0A162TPH7	Uncharacterized protein. (278 aa)
	A0A167M8S7	Uncharacterized protein. (268 aa)
	A0A167RDA1	Uncharacterized protein. (277 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N8A9	A0A162TPH7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N8A9	A0A167M8S7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162N8A9	A0A167RDA1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162TPH7	A0A162N8A9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162TPH7	A0A167M8S7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A162TPH7	A0A167RDA1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167M8S7	A0A162N8A9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167M8S7	A0A162TPH7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167M8S7	A0A167RDA1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167RDA1	A0A162N8A9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167RDA1	A0A162TPH7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A167RDA1	A0A167M8S7	Uncharacterized protein.	Uncharacterized protein.	0.999