(35 nodes) RNA polymerase network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162NH54	Uncharacterized protein. (58 aa)
	A0A167R707	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1158 aa)
	A0A167QXW1	Uncharacterized protein. (58 aa)
	A0A167QSF8	Uncharacterized protein. (479 aa)
	A0A167QC51	SPOC domain-containing protein. (169 aa)
	A0A167PGW7	DPH-type MB domain-containing protein. (83 aa)
	A0A167P286	RPOLD domain-containing protein. (349 aa)
	A0A167P0B8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1646 aa)
	A0A167NL99	RNA_pol_L_2 domain-containing protein. (149 aa)
	A0A167NAY7	Uncharacterized protein. (122 aa)
	A0A167N7L9	Uncharacterized protein. (171 aa)
	A0A167MIZ8	Uncharacterized protein. (283 aa)
	A0A167M829	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (281 aa)
	A0A167M7Y4	Endo/exonuclease/phosphatase domain-containing protein. (389 aa)
	A0A167LD35	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (542 aa)
	A0A167LA05	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (554 aa)
	A0A162NHM1	Uncharacterized protein. (211 aa)
	A0A162NIB4	Uncharacterized protein. (364 aa)
	A0A162Q8J6	Uncharacterized protein. (306 aa)
	A0A162TC68	Uncharacterized protein. (62 aa)
	A0A162TSV0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (107 aa)
	A0A162TY78	Uncharacterized protein. (209 aa)
	A0A162TYL6	Uncharacterized protein. (303 aa)
	A0A162UBR9	Uncharacterized protein. (326 aa)
	A0A162WP08	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1195 aa)
	A0A162XC13	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1392 aa)
	A0A162XV76	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (114 aa)
	A0A162ZY31	Uncharacterized protein. (171 aa)
	A0A163A6F8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (599 aa)
	A0A163AH94	RPOL4c domain-containing protein. (145 aa)
	A0A163B6A5	Uncharacterized protein. (120 aa)
	A0A163D2G5	RNA_pol_L_2 domain-containing protein. (95 aa)
	A0A167JQJ2	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (222 aa)
	A0A167KF55	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1149 aa)
	A0A167KMD8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (130 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NH54	A0A162NHM1	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A162NH54	A0A162Q8J6	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A162NH54	A0A162TC68	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A162NH54	A0A162TSV0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.984
A0A162NH54	A0A162TY78	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162NH54	A0A162TYL6	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A162NH54	A0A162UBR9	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A162NH54	A0A162WP08	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
A0A162NH54	A0A162XC13	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
A0A162NH54	A0A162XV76	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.985
A0A162NH54	A0A162ZY31	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A162NH54	A0A163A6F8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.983
A0A162NH54	A0A163AH94	Uncharacterized protein.	RPOL4c domain-containing protein.	0.983
A0A162NH54	A0A163B6A5	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A162NH54	A0A163D2G5	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.984
A0A162NH54	A0A167JQJ2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.969
A0A162NH54	A0A167KF55	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
A0A162NH54	A0A167KMD8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.981
A0A162NH54	A0A167LD35	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.972
A0A162NH54	A0A167M829	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.973