5 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00259	Uncharacterized protein. (147 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00259	Mo04951	G7DSQ7	G7E608	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
Mo00259	Mo06504	G7DSQ7	G7EAE1	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo00259	Mo06538	G7DSQ7	G7EAH5	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo00259	Mo06560	G7DSQ7	G7EAJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Mo04951	Mo00259	G7E608	G7DSQ7	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
Mo04951	Mo06504	G7E608	G7EAE1	RPOLD domain-containing protein.	Uncharacterized protein.	0.998
Mo04951	Mo06538	G7E608	G7EAH5	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
Mo04951	Mo06560	G7E608	G7EAJ7	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Mo06504	Mo00259	G7EAE1	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo06504	Mo04951	G7EAE1	G7E608	Uncharacterized protein.	RPOLD domain-containing protein.	0.998
Mo06504	Mo06538	G7EAE1	G7EAH5	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo06504	Mo06560	G7EAE1	G7EAJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Mo06538	Mo00259	G7EAH5	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo06538	Mo04951	G7EAH5	G7E608	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
Mo06538	Mo06504	G7EAH5	G7EAE1	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo06538	Mo06560	G7EAH5	G7EAJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo06560	Mo00259	G7EAJ7	G7DSQ7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
Mo06560	Mo04951	G7EAJ7	G7E608	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.999
Mo06560	Mo06504	G7EAJ7	G7EAE1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
Mo06560	Mo06538	G7EAJ7	G7EAH5	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998