(54 nodes) Organellar ribosome, and 5S rRNA binding network (Mixia osmundae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00024	MRP-S28 domain-containing protein. (240 aa)
	Mo00337	AAA domain-containing protein. (414 aa)
	Mo00587	Uncharacterized protein. (268 aa)
	Mo00410	Uncharacterized protein. (200 aa)
	Mo00631	Ribosomal_L5_C domain-containing protein. (301 aa)
	Mo00918	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (335 aa)
	Mo00958	Uncharacterized protein. (176 aa)
	Mo00989	Uncharacterized protein. (361 aa)
	Mo01177	Uncharacterized protein. (182 aa)
	Mo01215	Uncharacterized protein. (380 aa)
	Mo01335	Uncharacterized protein. (1146 aa)
	Mo01452	Uncharacterized protein. (283 aa)
	Mo01550	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (224 aa)
	Mo01634	KOW domain-containing protein. (133 aa)
	Mo01811	Uncharacterized protein. (375 aa)
	Mo01894	DRBM domain-containing protein. (476 aa)
	Mo01896	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (133 aa)
	Mo02027	MRP-L46 domain-containing protein. (240 aa)
	Mo02040	Uncharacterized protein. (146 aa)
	Mo02080	Ribosomal_L18_c domain-containing protein. (296 aa)
	Mo02130	Ribosomal_S10 domain-containing protein. (586 aa)
	Mo02182	Uncharacterized protein. (56 aa)
	Mo02337	Uncharacterized protein. (290 aa)
	Mo02437	Uncharacterized protein. (189 aa)
	Mo02462	Ribosomal_L18e/L15P domain-containing protein. (291 aa)
	Mo02493	Uncharacterized protein. (372 aa)
	Mo02554	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (95 aa)
	Mo02589	Uncharacterized protein. (208 aa)
	Mo02776	Ribosomal_L2_C domain-containing protein. (404 aa)
	Mo02817	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (342 aa)
	Mo02871	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (171 aa)
	Mo03067	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (278 aa)
	Mo03193	Uncharacterized protein. (217 aa)
	Mo03344	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (158 aa)
	Mo03356	Uncharacterized protein. (356 aa)
	Mo03610	Uncharacterized protein. (115 aa)
	Mo04148	Uncharacterized protein. (196 aa)
	Mo04380	L51_S25_CI-B8 domain-containing protein. (182 aa)
	Mo04384	Uncharacterized protein. (196 aa)
	Mo04527	Uncharacterized protein. (105 aa)
	Mo04627	RRF domain-containing protein. (285 aa)
	Mo04833	Uncharacterized protein. (306 aa)
	Mo05041	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (270 aa)
	Mo05139	Ribosomal_S7 domain-containing protein. (299 aa)
	Mo05247	Uncharacterized protein. (124 aa)
	Mo05409	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (244 aa)
	Mo05573	Fes1 domain-containing protein. (323 aa)
	Mo05581	Uncharacterized protein. (336 aa)
	Mo06042	RF_PROK_I domain-containing protein. (217 aa)
	Mo06579	Uncharacterized protein. (787 aa)
	Mo06656	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (347 aa)
	Mo06717	Ribosomal_L30 domain-containing protein; Belongs to the universal ribosomal protein uL30 family. (147 aa)
	Mo06719	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (475 aa)
	Mo06738	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (98 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00024	Mo00337	G7DS24	G7DSY2	MRP-S28 domain-containing protein.	AAA domain-containing protein.	0.997
Mo00024	Mo00410	G7DS24	G7DTB7	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.994
Mo00024	Mo00587	G7DS24	G7DT62	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.987
Mo00024	Mo00631	G7DS24	G7DTS4	MRP-S28 domain-containing protein.	Ribosomal_L5_C domain-containing protein.	0.931
Mo00024	Mo00918	G7DS24	G7DUK9	MRP-S28 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.986
Mo00024	Mo00958	G7DS24	G7DUP9	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.996
Mo00024	Mo00989	G7DS24	G7DUS8	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.938
Mo00024	Mo01177	G7DS24	G7DVB5	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.996
Mo00024	Mo01215	G7DS24	G7DVF3	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.931
Mo00024	Mo01452	G7DS24	G7DWB0	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.998
Mo00024	Mo01550	G7DS24	G7DWD5	MRP-S28 domain-containing protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.987
Mo00024	Mo01634	G7DS24	G7DWL9	MRP-S28 domain-containing protein.	KOW domain-containing protein.	0.875
Mo00024	Mo01811	G7DS24	G7DWP4	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.997
Mo00024	Mo01894	G7DS24	G7DXC8	MRP-S28 domain-containing protein.	DRBM domain-containing protein.	0.960
Mo00024	Mo01896	G7DS24	G7DXD0	MRP-S28 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.906
Mo00024	Mo02027	G7DS24	G7DXR3	MRP-S28 domain-containing protein.	MRP-L46 domain-containing protein.	0.989
Mo00024	Mo02040	G7DS24	G7DXS6	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.951
Mo00024	Mo02130	G7DS24	G7DY16	MRP-S28 domain-containing protein.	Ribosomal_S10 domain-containing protein.	0.998
Mo00024	Mo02182	G7DS24	G7DY67	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.980
Mo00024	Mo02337	G7DS24	G7DYM0	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.986