22 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00297	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (539 aa)
	Mo00559	Uncharacterized protein. (410 aa)
	Mo00387	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1152 aa)
	Mo00851	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1436 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01628	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (441 aa)
	Mo02683	Uncharacterized protein. (595 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo03123	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1236 aa)
	Mo03293	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1866 aa)
	Mo04078	Uncharacterized protein. (217 aa)
	Mo04756	Uncharacterized protein. (539 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo05533	RPOLD domain-containing protein. (368 aa)
	Mo05575	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1375 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo06215	RNA_pol_L_2 domain-containing protein. (171 aa)
	Mo06470	Uncharacterized protein. (199 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00259	Mo00387	G7DSQ7	G7DT94	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo00559	G7DSQ7	G7DT34	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00259	Mo00851	G7DSQ7	G7DUE3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo01105	G7DSQ7	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00259	Mo02683	G7DSQ7	G7DZL3	Uncharacterized protein.	Uncharacterized protein.	0.993
Mo00259	Mo03004	G7DSQ7	G7E0H8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo03123	G7DSQ7	G7E0U6	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo03293	G7DSQ7	G7E1B3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo04078	G7DSQ7	G7E3J0	Uncharacterized protein.	Uncharacterized protein.	0.984
Mo00259	Mo04756	G7DSQ7	G7E5G4	Uncharacterized protein.	Uncharacterized protein.	0.985
Mo00259	Mo04951	G7DSQ7	G7E608	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
Mo00259	Mo05533	G7DSQ7	G7E7N5	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
Mo00259	Mo06213	G7DSQ7	G7E8P4	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
Mo00259	Mo06215	G7DSQ7	G7E8P6	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
Mo00259	Mo06470	G7DSQ7	G7EAA7	Uncharacterized protein.	Uncharacterized protein.	0.997
Mo00259	Mo06504	G7DSQ7	G7EAE1	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo00259	Mo06538	G7DSQ7	G7EAH5	Uncharacterized protein.	Uncharacterized protein.	0.999
Mo00259	Mo06560	G7DSQ7	G7EAJ7	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Mo00387	Mo00259	G7DT94	G7DSQ7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.998
Mo00387	Mo00559	G7DT94	G7DT34	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.952