22 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo03673	Uncharacterized protein. (271 aa)
	Mo03551	Protein kinase domain-containing protein. (2080 aa)
	Mo03368	Uncharacterized protein. (1857 aa)
	Mo02287	SEC7 domain-containing protein. (2579 aa)
	Mo01972	Uncharacterized protein. (330 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo01671	Uncharacterized protein. (433 aa)
	Mo01599	Protein kinase domain-containing protein. (832 aa)
	Mo00988	PCI domain-containing protein. (435 aa)
	Mo05122	Plus3 domain-containing protein. (557 aa)
	Mo05021	Uncharacterized protein. (1296 aa)
	Mo04562	Zds_C domain-containing protein. (1608 aa)
	Mo04479	Uncharacterized protein. (217 aa)
	Mo04237	Uncharacterized protein. (399 aa)
	Mo00977	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (159 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00158	Uncharacterized protein. (2410 aa)
	Mo04202	Uncharacterized protein. (637 aa)
	Mo03927	Uncharacterized protein. (466 aa)
	Mo05892	Uncharacterized protein. (496 aa)
	Mo06014	CDC73_C domain-containing protein. (418 aa)
	Mo06723	Uncharacterized protein. (1362 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00158	Mo00259	G7DSF7	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.926
Mo00158	Mo00977	G7DSF7	G7DUR7	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.767
Mo00158	Mo01599	G7DSF7	G7DWI4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.488
Mo00158	Mo01895	G7DSF7	G7DXC9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.958
Mo00158	Mo01972	G7DSF7	G7DXK5	Uncharacterized protein.	Uncharacterized protein.	0.961
Mo00158	Mo02287	G7DSF7	G7DYH1	Uncharacterized protein.	SEC7 domain-containing protein.	0.985
Mo00158	Mo03368	G7DSF7	G7E1I7	Uncharacterized protein.	Uncharacterized protein.	0.504
Mo00158	Mo03551	G7DSF7	G7E1W5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.542
Mo00158	Mo04479	G7DSF7	G7E4P0	Uncharacterized protein.	Uncharacterized protein.	0.691
Mo00158	Mo04562	G7DSF7	G7E4X2	Uncharacterized protein.	Zds_C domain-containing protein.	0.915
Mo00158	Mo05021	G7DSF7	G7E676	Uncharacterized protein.	Uncharacterized protein.	0.963
Mo00158	Mo05122	G7DSF7	G7E6H6	Uncharacterized protein.	Plus3 domain-containing protein.	0.945
Mo00158	Mo05892	G7DSF7	G7E981	Uncharacterized protein.	Uncharacterized protein.	0.942
Mo00158	Mo06014	G7DSF7	G7E9K0	Uncharacterized protein.	CDC73_C domain-containing protein.	0.947
Mo00158	Mo06723	G7DSF7	G7EB10	Uncharacterized protein.	Uncharacterized protein.	0.988
Mo00259	Mo00158	G7DSQ7	G7DSF7	Uncharacterized protein.	Uncharacterized protein.	0.926
Mo00259	Mo00977	G7DSQ7	G7DUR7	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.877
Mo00259	Mo01599	G7DSQ7	G7DWI4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.627
Mo00259	Mo01895	G7DSQ7	G7DXC9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
Mo00259	Mo01972	G7DSQ7	G7DXK5	Uncharacterized protein.	Uncharacterized protein.	0.985