19 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo01599	Protein kinase domain-containing protein. (832 aa)
	Mo02260	Uncharacterized protein; Belongs to the cyclin family. (409 aa)
	Mo02287	SEC7 domain-containing protein. (2579 aa)
	Mo02880	Uncharacterized protein. (423 aa)
	Mo00158	Uncharacterized protein. (2410 aa)
	Mo02881	Uncharacterized protein. (422 aa)
	Mo02945	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (596 aa)
	Mo04238	WD_REPEATS_REGION domain-containing protein. (353 aa)
	Mo04479	Uncharacterized protein. (217 aa)
	Mo04562	Zds_C domain-containing protein. (1608 aa)
	Mo04834	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (110 aa)
	Mo05021	Uncharacterized protein. (1296 aa)
	Mo05122	Plus3 domain-containing protein. (557 aa)
	Mo05892	Uncharacterized protein. (496 aa)
	Mo06014	CDC73_C domain-containing protein. (418 aa)
	Mo06723	Uncharacterized protein. (1362 aa)
	Mo00427	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (102 aa)
	Mo00977	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (159 aa)
	Mo01576	CID domain-containing protein. (267 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00158	Mo00977	G7DSF7	G7DUR7	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.767
Mo00158	Mo01599	G7DSF7	G7DWI4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.488
Mo00158	Mo02260	G7DSF7	G7DYE4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.429
Mo00158	Mo02287	G7DSF7	G7DYH1	Uncharacterized protein.	SEC7 domain-containing protein.	0.985
Mo00158	Mo02945	G7DSF7	G7E0B9	Uncharacterized protein.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.983
Mo00158	Mo04238	G7DSF7	G7E400	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.595
Mo00158	Mo04479	G7DSF7	G7E4P0	Uncharacterized protein.	Uncharacterized protein.	0.691
Mo00158	Mo04562	G7DSF7	G7E4X2	Uncharacterized protein.	Zds_C domain-containing protein.	0.915
Mo00158	Mo04834	G7DSF7	G7E5P1	Uncharacterized protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.964
Mo00158	Mo05021	G7DSF7	G7E676	Uncharacterized protein.	Uncharacterized protein.	0.963
Mo00158	Mo05122	G7DSF7	G7E6H6	Uncharacterized protein.	Plus3 domain-containing protein.	0.945
Mo00158	Mo05892	G7DSF7	G7E981	Uncharacterized protein.	Uncharacterized protein.	0.942
Mo00158	Mo06014	G7DSF7	G7E9K0	Uncharacterized protein.	CDC73_C domain-containing protein.	0.947
Mo00158	Mo06723	G7DSF7	G7EB10	Uncharacterized protein.	Uncharacterized protein.	0.988
Mo00427	Mo04238	G7DTD4	G7E400	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	WD_REPEATS_REGION domain-containing protein.	0.707
Mo00427	Mo04479	G7DTD4	G7E4P0	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.990
Mo00427	Mo04834	G7DTD4	G7E5P1	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.675
Mo00427	Mo05021	G7DTD4	G7E676	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.704
Mo00427	Mo05892	G7DTD4	G7E981	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.666
Mo00427	Mo06014	G7DTD4	G7E9K0	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	CDC73_C domain-containing protein.	0.657