10 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo05723	Uncharacterized protein. (585 aa)
	Mo00069	Uncharacterized protein. (1133 aa)
	Mo00347	TFIIB-type domain-containing protein. (362 aa)
	Mo00380	TFIIE beta domain-containing protein. (246 aa)
	Mo00411	Uncharacterized protein. (367 aa)
	Mo02177	CBFD_NFYB_HMF domain-containing protein. (221 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo03847	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (773 aa)
	Mo04479	Uncharacterized protein. (217 aa)
	Mo04632	TAF domain-containing protein. (511 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00069	Mo00347	G7DS68	G7DSZ2	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.978
Mo00069	Mo00380	G7DS68	G7DT87	Uncharacterized protein.	TFIIE beta domain-containing protein.	0.856
Mo00069	Mo00411	G7DS68	G7DTB8	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00069	Mo03847	G7DS68	G7E2Z0	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.963
Mo00069	Mo04632	G7DS68	G7E542	Uncharacterized protein.	TAF domain-containing protein.	0.998
Mo00069	Mo05723	G7DS68	G7E874	Uncharacterized protein.	Uncharacterized protein.	0.933
Mo00347	Mo00069	G7DSZ2	G7DS68	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.978
Mo00347	Mo00380	G7DSZ2	G7DT87	TFIIB-type domain-containing protein.	TFIIE beta domain-containing protein.	0.984
Mo00347	Mo00411	G7DSZ2	G7DTB8	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.998
Mo00347	Mo02177	G7DSZ2	G7DY62	TFIIB-type domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.633
Mo00347	Mo02706	G7DSZ2	G7DZN5	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.829
Mo00347	Mo03847	G7DSZ2	G7E2Z0	TFIIB-type domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.992
Mo00347	Mo04632	G7DSZ2	G7E542	TFIIB-type domain-containing protein.	TAF domain-containing protein.	0.908
Mo00347	Mo05723	G7DSZ2	G7E874	TFIIB-type domain-containing protein.	Uncharacterized protein.	0.984
Mo00380	Mo00069	G7DT87	G7DS68	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.856
Mo00380	Mo00347	G7DT87	G7DSZ2	TFIIE beta domain-containing protein.	TFIIB-type domain-containing protein.	0.984
Mo00380	Mo00411	G7DT87	G7DTB8	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.981
Mo00380	Mo02706	G7DT87	G7DZN5	TFIIE beta domain-containing protein.	Uncharacterized protein.	0.987
Mo00380	Mo03847	G7DT87	G7E2Z0	TFIIE beta domain-containing protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.989
Mo00380	Mo04632	G7DT87	G7E542	TFIIE beta domain-containing protein.	TAF domain-containing protein.	0.862