(42 nodes) rRNA binding network (Mixia osmundae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo05247	Uncharacterized protein. (124 aa)
	Mo00206	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	Mo00671	Brix domain-containing protein. (513 aa)
	Mo00731	RRP7 domain-containing protein. (462 aa)
	Mo00784	Uncharacterized protein. (293 aa)
	Mo00958	Uncharacterized protein. (176 aa)
	Mo01087	S4 RNA-binding domain-containing protein. (182 aa)
	Mo01137	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (155 aa)
	Mo01452	Uncharacterized protein. (283 aa)
	Mo01536	Uncharacterized protein. (356 aa)
	Mo01550	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (224 aa)
	Mo01625	Brix domain-containing protein. (481 aa)
	Mo01896	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (133 aa)
	Mo01985	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (176 aa)
	Mo02000	Uncharacterized protein. (486 aa)
	Mo01999	Uncharacterized protein. (488 aa)
	Mo02080	Ribosomal_L18_c domain-containing protein. (296 aa)
	Mo02247	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	Mo03005	Uncharacterized protein. (263 aa)
	Mo03344	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (158 aa)
	Mo03427	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (211 aa)
	Mo03490	Brix domain-containing protein. (355 aa)
	Mo03599	Ribosomal_L23eN domain-containing protein. (203 aa)
	Mo03793	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (230 aa)
	Mo03842	Uncharacterized protein. (713 aa)
	Mo03859	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	Mo04039	Brix domain-containing protein. (327 aa)
	Mo04069	Brix domain-containing protein. (365 aa)
	Mo04134	Uncharacterized protein. (344 aa)
	Mo04256	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (277 aa)
	Mo04452	Uncharacterized protein. (1414 aa)
	Mo04563	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (283 aa)
	Mo04625	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (849 aa)
	Mo04771	S4 RNA-binding domain-containing protein. (320 aa)
	Mo04931	CCHC-type domain-containing protein. (1271 aa)
	Mo05139	Ribosomal_S7 domain-containing protein. (299 aa)
	Mo05374	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (203 aa)
	Mo05409	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (244 aa)
	Mo05439	Uncharacterized protein. (1310 aa)
	Mo05749	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (451 aa)
	Mo05876	Uncharacterized protein. (211 aa)
	Mo05917	RL10P_insert domain-containing protein. (494 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00206	Mo00958	G7DSK2	G7DUP9	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.890
Mo00206	Mo01087	G7DSK2	G7DV25	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	S4 RNA-binding domain-containing protein.	0.896
Mo00206	Mo01137	G7DSK2	G7DV75	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.	0.999
Mo00206	Mo01452	G7DSK2	G7DWB0	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.940
Mo00206	Mo01536	G7DSK2	G7DWC1	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.984
Mo00206	Mo01550	G7DSK2	G7DWD5	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.914
Mo00206	Mo01896	G7DSK2	G7DXD0	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.991
Mo00206	Mo01985	G7DSK2	G7DXL8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
Mo00206	Mo01999	G7DSK2	G7DXN3	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.984
Mo00206	Mo02000	G7DSK2	G7DXN2	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.984
Mo00206	Mo02080	G7DSK2	G7DXW6	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal_L18_c domain-containing protein.	0.999
Mo00206	Mo02247	G7DSK2	G7DYD1	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
Mo00206	Mo03344	G7DSK2	G7E1G3	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.461
Mo00206	Mo03427	G7DSK2	G7E1P6	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
Mo00206	Mo03490	G7DSK2	G7E1V8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Brix domain-containing protein.	0.725
Mo00206	Mo03599	G7DSK2	G7E265	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal_L23eN domain-containing protein.	0.999
Mo00206	Mo03793	G7DSK2	G7E2Q8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.941
Mo00206	Mo03859	G7DSK2	G7E302	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
Mo00206	Mo04134	G7DSK2	G7E3P5	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
Mo00206	Mo04256	G7DSK2	G7E418	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.987