21 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo04238	WD_REPEATS_REGION domain-containing protein. (353 aa)
	Mo04562	Zds_C domain-containing protein. (1608 aa)
	Mo05021	Uncharacterized protein. (1296 aa)
	Mo05122	Plus3 domain-containing protein. (557 aa)
	Mo01275	PWWP domain-containing protein. (668 aa)
	Mo01214	TPT domain-containing protein. (615 aa)
	Mo00977	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (159 aa)
	Mo00787	Uncharacterized protein. (624 aa)
	Mo00427	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (102 aa)
	Mo03551	Protein kinase domain-containing protein. (2080 aa)
	Mo04479	Uncharacterized protein. (217 aa)
	Mo06014	CDC73_C domain-containing protein. (418 aa)
	Mo06723	Uncharacterized protein. (1362 aa)
	Mo05766	SGNH_hydro domain-containing protein. (330 aa)
	Mo05892	Uncharacterized protein. (496 aa)
	Mo01972	Uncharacterized protein. (330 aa)
	Mo02260	Uncharacterized protein; Belongs to the cyclin family. (409 aa)
	Mo02287	SEC7 domain-containing protein. (2579 aa)
	Mo01599	Protein kinase domain-containing protein. (832 aa)
	Mo01576	CID domain-containing protein. (267 aa)
	Mo02945	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (596 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00427	Mo01972	G7DTD4	G7DXK5	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.662
Mo00427	Mo04238	G7DTD4	G7E400	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	WD_REPEATS_REGION domain-containing protein.	0.707
Mo00427	Mo04479	G7DTD4	G7E4P0	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.990
Mo00427	Mo05021	G7DTD4	G7E676	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.704
Mo00427	Mo05892	G7DTD4	G7E981	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.666
Mo00427	Mo06014	G7DTD4	G7E9K0	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	CDC73_C domain-containing protein.	0.657
Mo00427	Mo06723	G7DTD4	G7EB10	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.648
Mo00977	Mo01972	G7DUR7	G7DXK5	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.434
Mo00977	Mo02287	G7DUR7	G7DYH1	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	SEC7 domain-containing protein.	0.855
Mo00977	Mo02945	G7DUR7	G7E0B9	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.539
Mo00977	Mo04562	G7DUR7	G7E4X2	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Zds_C domain-containing protein.	0.532
Mo00977	Mo05021	G7DUR7	G7E676	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.719
Mo00977	Mo05122	G7DUR7	G7E6H6	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Plus3 domain-containing protein.	0.734
Mo00977	Mo05892	G7DUR7	G7E981	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.857
Mo00977	Mo06014	G7DUR7	G7E9K0	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	CDC73_C domain-containing protein.	0.872
Mo00977	Mo06723	G7DUR7	G7EB10	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.942
Mo01275	Mo01599	G7DVL3	G7DWI4	PWWP domain-containing protein.	Protein kinase domain-containing protein.	0.670
Mo01275	Mo02260	G7DVL3	G7DYE4	PWWP domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.816
Mo01275	Mo03551	G7DVL3	G7E1W5	PWWP domain-containing protein.	Protein kinase domain-containing protein.	0.670
Mo01576	Mo01599	G7DWG1	G7DWI4	CID domain-containing protein.	Protein kinase domain-containing protein.	0.967