6 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo06014	CDC73_C domain-containing protein. (418 aa)
	Mo04238	WD_REPEATS_REGION domain-containing protein. (353 aa)
	Mo04562	Zds_C domain-containing protein. (1608 aa)
	Mo05021	Uncharacterized protein. (1296 aa)
	Mo05122	Plus3 domain-containing protein. (557 aa)
	Mo05892	Uncharacterized protein. (496 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo04238	Mo04562	G7E400	G7E4X2	WD_REPEATS_REGION domain-containing protein.	Zds_C domain-containing protein.	0.804
Mo04238	Mo05021	G7E400	G7E676	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.992
Mo04238	Mo05122	G7E400	G7E6H6	WD_REPEATS_REGION domain-containing protein.	Plus3 domain-containing protein.	0.942
Mo04238	Mo05892	G7E400	G7E981	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.896
Mo04238	Mo06014	G7E400	G7E9K0	WD_REPEATS_REGION domain-containing protein.	CDC73_C domain-containing protein.	0.993
Mo04562	Mo04238	G7E4X2	G7E400	Zds_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.804
Mo04562	Mo05021	G7E4X2	G7E676	Zds_C domain-containing protein.	Uncharacterized protein.	0.998
Mo04562	Mo05122	G7E4X2	G7E6H6	Zds_C domain-containing protein.	Plus3 domain-containing protein.	0.995
Mo04562	Mo05892	G7E4X2	G7E981	Zds_C domain-containing protein.	Uncharacterized protein.	0.999
Mo04562	Mo06014	G7E4X2	G7E9K0	Zds_C domain-containing protein.	CDC73_C domain-containing protein.	0.998
Mo05021	Mo04238	G7E676	G7E400	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.992
Mo05021	Mo04562	G7E676	G7E4X2	Uncharacterized protein.	Zds_C domain-containing protein.	0.998
Mo05021	Mo05122	G7E676	G7E6H6	Uncharacterized protein.	Plus3 domain-containing protein.	0.996
Mo05021	Mo05892	G7E676	G7E981	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo05021	Mo06014	G7E676	G7E9K0	Uncharacterized protein.	CDC73_C domain-containing protein.	0.998
Mo05122	Mo04238	G7E6H6	G7E400	Plus3 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.942
Mo05122	Mo04562	G7E6H6	G7E4X2	Plus3 domain-containing protein.	Zds_C domain-containing protein.	0.995
Mo05122	Mo05021	G7E6H6	G7E676	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
Mo05122	Mo05892	G7E6H6	G7E981	Plus3 domain-containing protein.	Uncharacterized protein.	0.996
Mo05122	Mo06014	G7E6H6	G7E9K0	Plus3 domain-containing protein.	CDC73_C domain-containing protein.	0.996