74 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00105	Ubiquitin-like domain-containing protein. (331 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00393	Uncharacterized protein. (1209 aa)
	Mo00408	Uncharacterized protein. (1263 aa)
	Mo00483	ERCC4 domain-containing protein. (992 aa)
	Mo00509	Uncharacterized protein. (331 aa)
	Mo00716	UmuC domain-containing protein. (664 aa)
	Mo00860	Uncharacterized protein. (869 aa)
	Mo00904	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (474 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01170	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (458 aa)
	Mo01248	AAA domain-containing protein. (414 aa)
	Mo01373	AAA domain-containing protein. (818 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01695	PCI domain-containing protein. (354 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo01972	Uncharacterized protein. (330 aa)
	Mo02019	RING-type domain-containing protein. (370 aa)
	Mo02165	Uncharacterized protein. (966 aa)
	Mo02339	AAA domain-containing protein. (387 aa)
	Mo02345	Uncharacterized protein. (1002 aa)
	Mo02412	CIA30 domain-containing protein. (232 aa)
	Mo02480	TPR_REGION domain-containing protein. (316 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo02755	TPR_REGION domain-containing protein. (1036 aa)
	Mo02804	PCI domain-containing protein. (855 aa)
	Mo02873	Uncharacterized protein. (313 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo03105	Uncharacterized protein. (208 aa)
	Mo03367	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	Mo03435	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (768 aa)
	Mo03443	Helicase ATP-binding domain-containing protein. (797 aa)
	Mo03659	BSD domain-containing protein. (572 aa)
	Mo03676	RING-type domain-containing protein. (119 aa)
	Mo03714	CYCLIN domain-containing protein; Belongs to the cyclin family. (346 aa)
	Mo03960	Replication factor C subunit 1. (932 aa)
	Mo03834	CPSF_A domain-containing protein. (1243 aa)
	Mo03928	PCI domain-containing protein. (317 aa)
	Mo04129	Uncharacterized protein. (434 aa)
	Mo04145	Uncharacterized protein. (529 aa)
	Mo04147	PCI domain-containing protein. (476 aa)
	Mo04164	Integrase catalytic domain-containing protein. (1247 aa)
	Mo04222	MPN domain-containing protein. (373 aa)
	Mo04416	YL1_C domain-containing protein. (191 aa)
	Mo04442	AAA domain-containing protein. (382 aa)
	Mo04528	XPA_C domain-containing protein. (422 aa)
	Mo04581	Uncharacterized protein. (1083 aa)
	Mo04588	RRM domain-containing protein. (112 aa)
	Mo04746	Uncharacterized protein. (355 aa)
	Mo04803	Uncharacterized protein. (425 aa)
	Mo04823	Amino_oxidase domain-containing protein. (539 aa)
	Mo04861	PPIase cyclophilin-type domain-containing protein. (432 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo05403	Uncharacterized protein. (1771 aa)
	Mo05530	CULLIN_2 domain-containing protein; Belongs to the cullin family. (796 aa)
	Mo05588	Uncharacterized protein; Belongs to the actin family. (723 aa)
	Mo05846	Uncharacterized protein. (185 aa)
	Mo06202	Uncharacterized protein. (255 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo05858	Uncharacterized protein. (489 aa)
	Mo06140	PPIase cyclophilin-type domain-containing protein. (313 aa)
	Mo06159	Uncharacterized protein. (207 aa)
	Mo06387	Uncharacterized protein. (252 aa)
	Mo06386	Uncharacterized protein. (253 aa)
	Mo06393	WD_REPEATS_REGION domain-containing protein. (692 aa)
	Mo06392	WD_REPEATS_REGION domain-containing protein. (700 aa)
	Mo06396	AAA domain-containing protein. (446 aa)
	Mo06489	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	Mo06495	Uncharacterized protein. (1002 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)
	Mo06609	Uncharacterized protein; Belongs to the peptidase C19 family. (1135 aa)
	Mo06640	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (605 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00105	Mo00259	G7DSA4	G7DSQ7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.641
Mo00105	Mo00393	G7DSA4	G7DTA0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.607
Mo00105	Mo00408	G7DSA4	G7DTB5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.876
Mo00105	Mo00483	G7DSA4	G7DTJ0	Ubiquitin-like domain-containing protein.	ERCC4 domain-containing protein.	0.661
Mo00105	Mo00509	G7DSA4	G7DTL6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.629
Mo00105	Mo00716	G7DSA4	G7DU09	Ubiquitin-like domain-containing protein.	UmuC domain-containing protein.	0.743
Mo00105	Mo00860	G7DSA4	G7DUF1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.788
Mo00105	Mo00904	G7DSA4	G7DUJ5	Ubiquitin-like domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.571
Mo00105	Mo01105	G7DSA4	G7DV43	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.634
Mo00105	Mo01170	G7DSA4	G7DVA8	Ubiquitin-like domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.614
Mo00105	Mo01248	G7DSA4	G7DVI6	Ubiquitin-like domain-containing protein.	AAA domain-containing protein.	0.644
Mo00105	Mo01373	G7DSA4	G7DVW0	Ubiquitin-like domain-containing protein.	AAA domain-containing protein.	0.619
Mo00105	Mo01441	G7DSA4	G7DW99	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.660
Mo00105	Mo01695	G7DSA4	G7DWU3	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.762
Mo00105	Mo01895	G7DSA4	G7DXC9	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.614
Mo00105	Mo01972	G7DSA4	G7DXK5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.475
Mo00105	Mo02019	G7DSA4	G7DXQ2	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.632
Mo00105	Mo02165	G7DSA4	G7DY50	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.686
Mo00105	Mo02339	G7DSA4	G7DYM2	Ubiquitin-like domain-containing protein.	AAA domain-containing protein.	0.644
Mo00105	Mo02480	G7DSA4	G7DZ13	Ubiquitin-like domain-containing protein.	TPR_REGION domain-containing protein.	0.612