37 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo04581	Uncharacterized protein. (1083 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo05530	CULLIN_2 domain-containing protein; Belongs to the cullin family. (796 aa)
	Mo06202	Uncharacterized protein. (255 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo06159	Uncharacterized protein. (207 aa)
	Mo06489	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)
	Mo00105	Ubiquitin-like domain-containing protein. (331 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00408	Uncharacterized protein. (1263 aa)
	Mo00509	Uncharacterized protein. (331 aa)
	Mo00860	Uncharacterized protein. (869 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01170	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (458 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01695	PCI domain-containing protein. (354 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo02019	RING-type domain-containing protein. (370 aa)
	Mo02165	Uncharacterized protein. (966 aa)
	Mo02412	CIA30 domain-containing protein. (232 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo02804	PCI domain-containing protein. (855 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo03367	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	Mo03443	Helicase ATP-binding domain-containing protein. (797 aa)
	Mo03659	BSD domain-containing protein. (572 aa)
	Mo03676	RING-type domain-containing protein. (119 aa)
	Mo03714	CYCLIN domain-containing protein; Belongs to the cyclin family. (346 aa)
	Mo03834	CPSF_A domain-containing protein. (1243 aa)
	Mo03928	PCI domain-containing protein. (317 aa)
	Mo04145	Uncharacterized protein. (529 aa)
	Mo04147	PCI domain-containing protein. (476 aa)
	Mo04222	MPN domain-containing protein. (373 aa)
	Mo04588	RRM domain-containing protein. (112 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00105	Mo00259	G7DSA4	G7DSQ7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.641
Mo00105	Mo00408	G7DSA4	G7DTB5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.876
Mo00105	Mo00509	G7DSA4	G7DTL6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.629
Mo00105	Mo00860	G7DSA4	G7DUF1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.788
Mo00105	Mo01105	G7DSA4	G7DV43	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.634
Mo00105	Mo01170	G7DSA4	G7DVA8	Ubiquitin-like domain-containing protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.614
Mo00105	Mo01441	G7DSA4	G7DW99	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.660
Mo00105	Mo01695	G7DSA4	G7DWU3	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.762
Mo00105	Mo01895	G7DSA4	G7DXC9	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.614
Mo00105	Mo02019	G7DSA4	G7DXQ2	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.632
Mo00105	Mo02165	G7DSA4	G7DY50	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.686
Mo00105	Mo02804	G7DSA4	G7DZY3	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.770
Mo00105	Mo03004	G7DSA4	G7E0H8	Ubiquitin-like domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.716
Mo00105	Mo03367	G7DSA4	G7E1I6	Ubiquitin-like domain-containing protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.636
Mo00105	Mo03443	G7DSA4	G7E1R2	Ubiquitin-like domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.664
Mo00105	Mo03659	G7DSA4	G7E2C5	Ubiquitin-like domain-containing protein.	BSD domain-containing protein.	0.670
Mo00105	Mo03676	G7DSA4	G7E2E2	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.898
Mo00105	Mo03714	G7DSA4	G7E2H9	Ubiquitin-like domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.615
Mo00105	Mo03834	G7DSA4	G7E2X7	Ubiquitin-like domain-containing protein.	CPSF_A domain-containing protein.	0.750
Mo00105	Mo03928	G7DSA4	G7E370	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.742