36 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo04479	Uncharacterized protein. (217 aa)
	Mo06723	Uncharacterized protein. (1362 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06495	Uncharacterized protein. (1002 aa)
	Mo06489	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	Mo06159	Uncharacterized protein. (207 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo04834	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (110 aa)
	Mo04237	Uncharacterized protein. (399 aa)
	Mo03847	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (773 aa)
	Mo03714	CYCLIN domain-containing protein; Belongs to the cyclin family. (346 aa)
	Mo03659	BSD domain-containing protein. (572 aa)
	Mo03551	Protein kinase domain-containing protein. (2080 aa)
	Mo03443	Helicase ATP-binding domain-containing protein. (797 aa)
	Mo03367	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo02945	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (596 aa)
	Mo02893	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (760 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo02287	SEC7 domain-containing protein. (2579 aa)
	Mo02260	Uncharacterized protein; Belongs to the cyclin family. (409 aa)
	Mo02165	Uncharacterized protein. (966 aa)
	Mo02019	RING-type domain-containing protein. (370 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00427	Skp1_POZ domain-containing protein; Belongs to the SKP1 family. (102 aa)
	Mo00509	Uncharacterized protein. (331 aa)
	Mo00612	Uncharacterized protein. (385 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01170	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (458 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01599	Protein kinase domain-containing protein. (832 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo01972	Uncharacterized protein. (330 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00259	Mo00427	G7DSQ7	G7DTD4	Uncharacterized protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.663
Mo00259	Mo00509	G7DSQ7	G7DTL6	Uncharacterized protein.	Uncharacterized protein.	0.970
Mo00259	Mo00612	G7DSQ7	G7DTQ6	Uncharacterized protein.	Uncharacterized protein.	0.658
Mo00259	Mo01105	G7DSQ7	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00259	Mo01170	G7DSQ7	G7DVA8	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.967
Mo00259	Mo01441	G7DSQ7	G7DW99	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
Mo00259	Mo01599	G7DSQ7	G7DWI4	Uncharacterized protein.	Protein kinase domain-containing protein.	0.627
Mo00259	Mo01895	G7DSQ7	G7DXC9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
Mo00259	Mo01972	G7DSQ7	G7DXK5	Uncharacterized protein.	Uncharacterized protein.	0.985
Mo00259	Mo02019	G7DSQ7	G7DXQ2	Uncharacterized protein.	RING-type domain-containing protein.	0.967
Mo00259	Mo02165	G7DSQ7	G7DY50	Uncharacterized protein.	Uncharacterized protein.	0.969
Mo00259	Mo02260	G7DSQ7	G7DYE4	Uncharacterized protein.	Uncharacterized protein; Belongs to the cyclin family.	0.711
Mo00259	Mo02287	G7DSQ7	G7DYH1	Uncharacterized protein.	SEC7 domain-containing protein.	0.956
Mo00259	Mo02706	G7DSQ7	G7DZN5	Uncharacterized protein.	Uncharacterized protein.	0.824
Mo00259	Mo02893	G7DSQ7	G7E069	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.862
Mo00259	Mo02945	G7DSQ7	G7E0B9	Uncharacterized protein.	FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...]	0.958
Mo00259	Mo03004	G7DSQ7	G7E0H8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo03367	G7DSQ7	G7E1I6	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.967
Mo00259	Mo03443	G7DSQ7	G7E1R2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.969
Mo00259	Mo03551	G7DSQ7	G7E1W5	Uncharacterized protein.	Protein kinase domain-containing protein.	0.627