41 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00791	TAFII55_N domain-containing protein. (461 aa)
	Mo00509	Uncharacterized protein. (331 aa)
	Mo00411	Uncharacterized protein. (367 aa)
	Mo00380	TFIIE beta domain-containing protein. (246 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01170	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (458 aa)
	Mo01254	Uncharacterized protein. (217 aa)
	Mo01474	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (163 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01741	TFIID_20kDa domain-containing protein. (543 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo01963	TAFII28 domain-containing protein. (138 aa)
	Mo02019	RING-type domain-containing protein. (370 aa)
	Mo02165	Uncharacterized protein. (966 aa)
	Mo02196	PHD-type domain-containing protein. (1211 aa)
	Mo02681	HTH TFE/IIEalpha-type domain-containing protein. (425 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo03367	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	Mo03443	Helicase ATP-binding domain-containing protein. (797 aa)
	Mo03536	Uncharacterized protein. (1605 aa)
	Mo03659	BSD domain-containing protein. (572 aa)
	Mo03714	CYCLIN domain-containing protein; Belongs to the cyclin family. (346 aa)
	Mo03847	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (773 aa)
	Mo04030	Uncharacterized protein. (738 aa)
	Mo04237	Uncharacterized protein. (399 aa)
	Mo04382	TAF4 domain-containing protein. (410 aa)
	Mo04632	TAF domain-containing protein. (511 aa)
	Mo04712	Uncharacterized protein. (180 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo05723	Uncharacterized protein. (585 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo06159	Uncharacterized protein. (207 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06489	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	Mo00069	Uncharacterized protein. (1133 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00347	TFIIB-type domain-containing protein. (362 aa)
	Mo00873	Uncharacterized protein. (210 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00069	Mo00259	G7DS68	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.842
Mo00069	Mo00347	G7DS68	G7DSZ2	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.978
Mo00069	Mo00380	G7DS68	G7DT87	Uncharacterized protein.	TFIIE beta domain-containing protein.	0.856
Mo00069	Mo00411	G7DS68	G7DTB8	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00069	Mo00509	G7DS68	G7DTL6	Uncharacterized protein.	Uncharacterized protein.	0.844
Mo00069	Mo00791	G7DS68	G7DU83	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.998
Mo00069	Mo00873	G7DS68	G7DUG4	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00069	Mo01105	G7DS68	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.841
Mo00069	Mo01170	G7DS68	G7DVA8	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.805
Mo00069	Mo01254	G7DS68	G7DVJ2	Uncharacterized protein.	Uncharacterized protein.	0.902
Mo00069	Mo01441	G7DS68	G7DW99	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.841
Mo00069	Mo01474	G7DS68	G7DW14	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.998
Mo00069	Mo01741	G7DS68	G7DWY9	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.998
Mo00069	Mo01895	G7DS68	G7DXC9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.841
Mo00069	Mo01963	G7DS68	G7DXJ6	Uncharacterized protein.	TAFII28 domain-containing protein.	0.998
Mo00069	Mo02019	G7DS68	G7DXQ2	Uncharacterized protein.	RING-type domain-containing protein.	0.845
Mo00069	Mo02165	G7DS68	G7DY50	Uncharacterized protein.	Uncharacterized protein.	0.841
Mo00069	Mo02196	G7DS68	G7DY81	Uncharacterized protein.	PHD-type domain-containing protein.	0.999
Mo00069	Mo02681	G7DS68	G7DZL1	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.844
Mo00069	Mo03004	G7DS68	G7E0H8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.937