27 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00559	Uncharacterized protein. (410 aa)
	Mo00411	Uncharacterized protein. (367 aa)
	Mo00509	Uncharacterized protein. (331 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01170	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (458 aa)
	Mo01174	Uncharacterized protein. (888 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo02019	RING-type domain-containing protein. (370 aa)
	Mo02165	Uncharacterized protein. (966 aa)
	Mo02583	Uncharacterized protein. (635 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo03123	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1236 aa)
	Mo03293	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1866 aa)
	Mo03367	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06489	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	Mo05764	Uncharacterized protein. (605 aa)
	Mo05533	RPOLD domain-containing protein. (368 aa)
	Mo05515	Ubiquitin-like domain-containing protein. (164 aa)
	Mo05507	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)
	Mo03927	Uncharacterized protein. (466 aa)
	Mo03714	CYCLIN domain-containing protein; Belongs to the cyclin family. (346 aa)
	Mo03659	BSD domain-containing protein. (572 aa)
	Mo03443	Helicase ATP-binding domain-containing protein. (797 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00343	Histone H2B; Belongs to the histone H2B family. (400 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00259	Mo00343	G7DSQ7	G7DSY8	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.935
Mo00259	Mo00411	G7DSQ7	G7DTB8	Uncharacterized protein.	Uncharacterized protein.	0.980
Mo00259	Mo00509	G7DSQ7	G7DTL6	Uncharacterized protein.	Uncharacterized protein.	0.970
Mo00259	Mo00559	G7DSQ7	G7DT34	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00259	Mo01105	G7DSQ7	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00259	Mo01170	G7DSQ7	G7DVA8	Uncharacterized protein.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.967
Mo00259	Mo01174	G7DSQ7	G7DVB2	Uncharacterized protein.	Uncharacterized protein.	0.976
Mo00259	Mo01441	G7DSQ7	G7DW99	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
Mo00259	Mo02019	G7DSQ7	G7DXQ2	Uncharacterized protein.	RING-type domain-containing protein.	0.967
Mo00259	Mo02165	G7DSQ7	G7DY50	Uncharacterized protein.	Uncharacterized protein.	0.969
Mo00259	Mo02706	G7DSQ7	G7DZN5	Uncharacterized protein.	Uncharacterized protein.	0.824
Mo00259	Mo03123	G7DSQ7	G7E0U6	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo03293	G7DSQ7	G7E1B3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Mo00259	Mo03367	G7DSQ7	G7E1I6	Uncharacterized protein.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.967
Mo00259	Mo03443	G7DSQ7	G7E1R2	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.969
Mo00259	Mo03659	G7DSQ7	G7E2C5	Uncharacterized protein.	BSD domain-containing protein.	0.973
Mo00259	Mo03714	G7DSQ7	G7E2H9	Uncharacterized protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.924
Mo00259	Mo03927	G7DSQ7	G7E369	Uncharacterized protein.	Uncharacterized protein.	0.995
Mo00259	Mo05507	G7DSQ7	G7E7K9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
Mo00259	Mo05515	G7DSQ7	G7E7L7	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.815