25 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00839	Uncharacterized protein. (866 aa)
	Mo06762	Uncharacterized protein. (605 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06517	Uncharacterized protein. (84 aa)
	Mo06505	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06470	Uncharacterized protein. (199 aa)
	Mo06048	TFIIB-type domain-containing protein. (636 aa)
	Mo05533	RPOLD domain-containing protein. (368 aa)
	Mo05390	SANT domain-containing protein. (779 aa)
	Mo04933	ENDO3c domain-containing protein. (407 aa)
	Mo04756	Uncharacterized protein. (539 aa)
	Mo04078	Uncharacterized protein. (217 aa)
	Mo03416	Uncharacterized protein. (836 aa)
	Mo02683	Uncharacterized protein. (595 aa)
	Mo02388	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1823 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo00893	Uncharacterized protein. (342 aa)
	Mo00851	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1436 aa)
	Mo00411	Uncharacterized protein. (367 aa)
	Mo00403	Uncharacterized protein. (1139 aa)
	Mo00387	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1152 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00213	Uncharacterized protein. (709 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00213	Mo00259	G7DSK9	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.674
Mo00213	Mo00387	G7DSK9	G7DT94	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.690
Mo00213	Mo00403	G7DSK9	G7DTB0	Uncharacterized protein.	Uncharacterized protein.	0.998
Mo00213	Mo00411	G7DSK9	G7DTB8	Uncharacterized protein.	Uncharacterized protein.	0.814
Mo00213	Mo00839	G7DSK9	G7DUD1	Uncharacterized protein.	Uncharacterized protein.	0.767
Mo00213	Mo00851	G7DSK9	G7DUE3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.788
Mo00213	Mo00893	G7DSK9	G7DUI4	Uncharacterized protein.	Uncharacterized protein.	0.665
Mo00213	Mo01105	G7DSK9	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.689
Mo00213	Mo02388	G7DSK9	G7DYS1	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.805
Mo00213	Mo02683	G7DSK9	G7DZL3	Uncharacterized protein.	Uncharacterized protein.	0.747
Mo00213	Mo03416	G7DSK9	G7E1N5	Uncharacterized protein.	Uncharacterized protein.	0.972
Mo00213	Mo04078	G7DSK9	G7E3J0	Uncharacterized protein.	Uncharacterized protein.	0.789
Mo00213	Mo04756	G7DSK9	G7E5G4	Uncharacterized protein.	Uncharacterized protein.	0.755
Mo00213	Mo05390	G7DSK9	G7E792	Uncharacterized protein.	SANT domain-containing protein.	0.851
Mo00213	Mo05533	G7DSK9	G7E7N5	Uncharacterized protein.	RPOLD domain-containing protein.	0.684
Mo00213	Mo06048	G7DSK9	G7E9N4	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.913
Mo00213	Mo06470	G7DSK9	G7EAA7	Uncharacterized protein.	Uncharacterized protein.	0.686
Mo00213	Mo06505	G7DSK9	G7EAE2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.665
Mo00213	Mo06762	G7DSK9	G7EB49	Uncharacterized protein.	Uncharacterized protein.	0.765
Mo00259	Mo00213	G7DSQ7	G7DSK9	Uncharacterized protein.	Uncharacterized protein.	0.674