38 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo00158	Uncharacterized protein. (2410 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00509	Uncharacterized protein. (331 aa)
	Mo00612	Uncharacterized protein. (385 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01170	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (458 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01756	Nuclear cap-binding protein subunit 2. (204 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo02019	RING-type domain-containing protein. (370 aa)
	Mo02105	TFIIS N-terminal domain-containing protein. (441 aa)
	Mo02165	Uncharacterized protein. (966 aa)
	Mo02287	SEC7 domain-containing protein. (2579 aa)
	Mo02706	Uncharacterized protein. (157 aa)
	Mo02893	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (760 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo03367	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (467 aa)
	Mo03443	Helicase ATP-binding domain-containing protein. (797 aa)
	Mo03624	Uncharacterized protein. (636 aa)
	Mo03659	BSD domain-containing protein. (572 aa)
	Mo03714	CYCLIN domain-containing protein; Belongs to the cyclin family. (346 aa)
	Mo03847	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (773 aa)
	Mo04237	Uncharacterized protein. (399 aa)
	Mo04562	Zds_C domain-containing protein. (1608 aa)
	Mo04834	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (110 aa)
	Mo04848	Uncharacterized protein. (865 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo05021	Uncharacterized protein. (1296 aa)
	Mo05122	Plus3 domain-containing protein. (557 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo05892	Uncharacterized protein. (496 aa)
	Mo06014	CDC73_C domain-containing protein. (418 aa)
	Mo06159	Uncharacterized protein. (207 aa)
	Mo06489	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (367 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)
	Mo06723	Uncharacterized protein. (1362 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00158	Mo00259	G7DSF7	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.926
Mo00158	Mo01105	G7DSF7	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.912
Mo00158	Mo01441	G7DSF7	G7DW99	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.908
Mo00158	Mo01756	G7DSF7	G7DX04	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.577
Mo00158	Mo01895	G7DSF7	G7DXC9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.958
Mo00158	Mo02105	G7DSF7	G7DXZ1	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.998
Mo00158	Mo02287	G7DSF7	G7DYH1	Uncharacterized protein.	SEC7 domain-containing protein.	0.985
Mo00158	Mo02893	G7DSF7	G7E069	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.873
Mo00158	Mo03004	G7DSF7	G7E0H8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.991
Mo00158	Mo03624	G7DSF7	G7E290	Uncharacterized protein.	Uncharacterized protein.	0.539
Mo00158	Mo04562	G7DSF7	G7E4X2	Uncharacterized protein.	Zds_C domain-containing protein.	0.915
Mo00158	Mo04834	G7DSF7	G7E5P1	Uncharacterized protein.	Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.	0.964
Mo00158	Mo04848	G7DSF7	G7E5Q5	Uncharacterized protein.	Uncharacterized protein.	0.661
Mo00158	Mo04951	G7DSF7	G7E608	Uncharacterized protein.	RPOLD domain-containing protein.	0.960
Mo00158	Mo05021	G7DSF7	G7E676	Uncharacterized protein.	Uncharacterized protein.	0.963
Mo00158	Mo05122	G7DSF7	G7E6H6	Uncharacterized protein.	Plus3 domain-containing protein.	0.945
Mo00158	Mo05892	G7DSF7	G7E981	Uncharacterized protein.	Uncharacterized protein.	0.942
Mo00158	Mo06014	G7DSF7	G7E9K0	Uncharacterized protein.	CDC73_C domain-containing protein.	0.947
Mo00158	Mo06159	G7DSF7	G7E9Z1	Uncharacterized protein.	Uncharacterized protein.	0.952
Mo00158	Mo06213	G7DSF7	G7E8P4	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.908