67 items (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mo03799	Uncharacterized protein; Belongs to the DEAD box helicase family. (480 aa)
	Mo00076	Uncharacterized protein. (491 aa)
	Mo00259	Uncharacterized protein. (147 aa)
	Mo00320	Protein-serine/threonine kinase. (434 aa)
	Mo00325	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (498 aa)
	Mo00343	Histone H2B; Belongs to the histone H2B family. (400 aa)
	Mo00411	Uncharacterized protein. (367 aa)
	Mo00645	WD_REPEATS_REGION domain-containing protein. (865 aa)
	Mo00748	AB hydrolase-1 domain-containing protein. (508 aa)
	Mo00846	Uncharacterized protein. (336 aa)
	Mo01105	Uncharacterized protein. (136 aa)
	Mo01254	Uncharacterized protein. (217 aa)
	Mo01441	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (146 aa)
	Mo01453	Uncharacterized protein. (547 aa)
	Mo01810	Protein kinase domain-containing protein. (800 aa)
	Mo01702	Uncharacterized protein. (349 aa)
	Mo01890	Aldo_ket_red domain-containing protein. (285 aa)
	Mo01895	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (143 aa)
	Mo01922	Lipoyl-binding domain-containing protein. (324 aa)
	Mo02081	Uncharacterized protein. (1183 aa)
	Mo02110	Uncharacterized protein. (279 aa)
	Mo02225	Uncharacterized protein. (739 aa)
	Mo02260	Uncharacterized protein; Belongs to the cyclin family. (409 aa)
	Mo02628	HATPase_c domain-containing protein. (728 aa)
	Mo02930	DUF2235 domain-containing protein. (437 aa)
	Mo03004	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2471 aa)
	Mo03354	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1070 aa)
	Mo03382	Uncharacterized protein. (607 aa)
	Mo03405	Uncharacterized protein. (548 aa)
	Mo03457	Aldo_ket_red domain-containing protein. (290 aa)
	Mo03551	Protein kinase domain-containing protein. (2080 aa)
	Mo03578	Uncharacterized protein. (250 aa)
	Mo03800	Uncharacterized protein; Belongs to the DEAD box helicase family. (559 aa)
	Mo03962	Uncharacterized protein. (520 aa)
	Mo03837	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5. Involved in ergosterol biosynthesis. In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (729 aa)
	Mo03847	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (773 aa)
	Mo03935	Aldo_ket_red domain-containing protein. (285 aa)
	Mo04232	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (532 aa)
	Mo04237	Uncharacterized protein. (399 aa)
	Mo04411	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (368 aa)
	Mo04419	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (385 aa)
	Mo04549	Uncharacterized protein. (594 aa)
	Mo04570	Aldo_ket_red domain-containing protein. (308 aa)
	Mo04608	GATA-type domain-containing protein. (1047 aa)
	Mo04615	Flavin_Reduct domain-containing protein. (200 aa)
	Mo04668	Uncharacterized protein. (352 aa)
	Mo04862	Serine/threonine-protein phosphatase. (632 aa)
	Mo04951	RPOLD domain-containing protein. (368 aa)
	Mo05170	Uncharacterized protein. (631 aa)
	Mo05196	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (370 aa)
	Mo05422	mRNA_triPase domain-containing protein. (637 aa)
	Mo05427	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1413 aa)
	Mo05428	Uncharacterized protein. (274 aa)
	Mo05454	Uncharacterized protein. (556 aa)
	Mo05578	BHLH domain-containing protein. (262 aa)
	Mo05695	Uncharacterized protein. (833 aa)
	Mo05723	Uncharacterized protein. (585 aa)
	Mo05757	DUF2183 domain-containing protein. (684 aa)
	Mo06213	RNA_pol_L_2 domain-containing protein. (148 aa)
	Mo06159	Uncharacterized protein. (207 aa)
	Mo06447	ARID domain-containing protein. (1112 aa)
	Mo06504	Uncharacterized protein. (298 aa)
	Mo06531	GATA-type domain-containing protein. (903 aa)
	Mo06538	Uncharacterized protein. (111 aa)
	Mo06560	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1327 aa)
	Mo06648	Uncharacterized protein. (298 aa)
	Mo06755	Uncharacterized protein. (310 aa)

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00076	Mo00259	G7DS75	G7DSQ7	Uncharacterized protein.	Uncharacterized protein.	0.703
Mo00076	Mo00411	G7DS75	G7DTB8	Uncharacterized protein.	Uncharacterized protein.	0.808
Mo00076	Mo01105	G7DS75	G7DV43	Uncharacterized protein.	Uncharacterized protein.	0.688
Mo00076	Mo01254	G7DS75	G7DVJ2	Uncharacterized protein.	Uncharacterized protein.	0.699
Mo00076	Mo01441	G7DS75	G7DW99	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.681
Mo00076	Mo01453	G7DS75	G7DWB1	Uncharacterized protein.	Uncharacterized protein.	0.801
Mo00076	Mo01895	G7DS75	G7DXC9	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.568
Mo00076	Mo02081	G7DS75	G7DXW7	Uncharacterized protein.	Uncharacterized protein.	0.570
Mo00076	Mo03004	G7DS75	G7E0H8	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.538
Mo00076	Mo03405	G7DS75	G7E1M4	Uncharacterized protein.	Uncharacterized protein.	0.801
Mo00076	Mo03847	G7DS75	G7E2Z0	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.698
Mo00076	Mo04237	G7DS75	G7E3Z9	Uncharacterized protein.	Uncharacterized protein.	0.690
Mo00076	Mo04668	G7DS75	G7E578	Uncharacterized protein.	Uncharacterized protein.	0.801
Mo00076	Mo04951	G7DS75	G7E608	Uncharacterized protein.	RPOLD domain-containing protein.	0.671
Mo00076	Mo05422	G7DS75	G7E7C4	Uncharacterized protein.	mRNA_triPase domain-containing protein.	0.801
Mo00076	Mo05723	G7DS75	G7E874	Uncharacterized protein.	Uncharacterized protein.	0.715
Mo00076	Mo06159	G7DS75	G7E9Z1	Uncharacterized protein.	Uncharacterized protein.	0.690
Mo00076	Mo06213	G7DS75	G7E8P4	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.681
Mo00076	Mo06447	G7DS75	G7EA84	Uncharacterized protein.	ARID domain-containing protein.	0.801
Mo00076	Mo06504	G7DS75	G7EAE1	Uncharacterized protein.	Uncharacterized protein.	0.719