(12 nodes) Mixed, incl. Translesion synthesis by POLI network (Piloderma croceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0C3AUP4	Uncharacterized protein. (285 aa)
	A0A0C3BAN7	Uncharacterized protein. (145 aa)
	A0A0C3BJY0	Uncharacterized protein. (573 aa)
	A0A0C3CRQ2	Uncharacterized protein. (533 aa)
	A0A0C3CS08	Uncharacterized protein. (63 aa)
	A0A0C3EZ84	Uncharacterized protein. (545 aa)
	A0A0C3FKD9	Uncharacterized protein. (259 aa)
	A0A0C3FTY2	Uncharacterized protein. (63 aa)
	A0A0C3FVL9	Uncharacterized protein. (421 aa)
	A0A0C3GBT8	Uncharacterized protein. (265 aa)
	A0A0C3GC46	Uncharacterized protein. (262 aa)
	A0A0C3GPJ0	Uncharacterized protein. (152 aa)

Your Current Organism:

Piloderma croceum

NCBI taxonomy Id: 765440
Other names: P. croceum F 1598, Piloderma croceum F 1598

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C3AUP4	A0A0C3BJY0	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0C3AUP4	A0A0C3CRQ2	Uncharacterized protein.	Uncharacterized protein.	0.521
A0A0C3AUP4	A0A0C3EZ84	Uncharacterized protein.	Uncharacterized protein.	0.520
A0A0C3AUP4	A0A0C3FTY2	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A0C3AUP4	A0A0C3GBT8	Uncharacterized protein.	Uncharacterized protein.	0.499
A0A0C3AUP4	A0A0C3GPJ0	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A0C3BAN7	A0A0C3BJY0	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A0C3BAN7	A0A0C3CRQ2	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A0C3BAN7	A0A0C3CS08	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A0C3BAN7	A0A0C3EZ84	Uncharacterized protein.	Uncharacterized protein.	0.521
A0A0C3BAN7	A0A0C3FTY2	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A0C3BAN7	A0A0C3FVL9	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A0C3BAN7	A0A0C3GBT8	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0C3BAN7	A0A0C3GPJ0	Uncharacterized protein.	Uncharacterized protein.	0.479
A0A0C3BJY0	A0A0C3AUP4	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0C3BJY0	A0A0C3BAN7	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A0C3BJY0	A0A0C3FTY2	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A0C3CRQ2	A0A0C3AUP4	Uncharacterized protein.	Uncharacterized protein.	0.521
A0A0C3CRQ2	A0A0C3BAN7	Uncharacterized protein.	Uncharacterized protein.	0.506
A0A0C3CRQ2	A0A0C3FTY2	Uncharacterized protein.	Uncharacterized protein.	0.477