(5 nodes) Protein tyrosine/threonine phosphatase activity, and Mitochondrial ribosome binding network (Piloderma croceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GUF1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (611 aa)
	A0A0C3BJC2	Uncharacterized protein. (150 aa)
	A0A0C3F532	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (183 aa)
	A0A0C3G2J8	Uncharacterized protein. (233 aa)
	A0A0C3GKH1	Uncharacterized protein. (175 aa)

Your Current Organism:

Piloderma croceum

NCBI taxonomy Id: 765440
Other names: P. croceum F 1598, Piloderma croceum F 1598

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0C3BJC2	A0A0C3F532	A0A0C3BJC2	A0A0C3F532	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.440
A0A0C3BJC2	A0A0C3G2J8	A0A0C3BJC2	A0A0C3G2J8	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A0C3BJC2	GUF1	A0A0C3BJC2	A0A0C3B0B9	Uncharacterized protein.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.632
A0A0C3F532	A0A0C3BJC2	A0A0C3F532	A0A0C3BJC2	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Uncharacterized protein.	0.440
A0A0C3F532	A0A0C3GKH1	A0A0C3F532	A0A0C3GKH1	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Uncharacterized protein.	0.431
A0A0C3F532	GUF1	A0A0C3F532	A0A0C3B0B9	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.632
A0A0C3G2J8	A0A0C3BJC2	A0A0C3G2J8	A0A0C3BJC2	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A0C3G2J8	A0A0C3GKH1	A0A0C3G2J8	A0A0C3GKH1	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A0C3G2J8	GUF1	A0A0C3G2J8	A0A0C3B0B9	Uncharacterized protein.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.632
A0A0C3GKH1	A0A0C3F532	A0A0C3GKH1	A0A0C3F532	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.431
A0A0C3GKH1	A0A0C3G2J8	A0A0C3GKH1	A0A0C3G2J8	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A0C3GKH1	GUF1	A0A0C3GKH1	A0A0C3B0B9	Uncharacterized protein.	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.632
GUF1	A0A0C3BJC2	A0A0C3B0B9	A0A0C3BJC2	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein.	0.632
GUF1	A0A0C3F532	A0A0C3B0B9	A0A0C3F532	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.632
GUF1	A0A0C3G2J8	A0A0C3B0B9	A0A0C3G2J8	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein.	0.632
GUF1	A0A0C3GKH1	A0A0C3B0B9	A0A0C3GKH1	Translation factor GUF1, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	Uncharacterized protein.	0.632