(23 nodes) snRNA metabolic process network (Piloderma croceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0C3FI94	RNase_PH domain-containing protein. (224 aa)
	A0A0C3FJY2	Uncharacterized protein. (310 aa)
	A0A0C3FNZ3	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (225 aa)
	A0A0C3G1A7	Bin3-type SAM domain-containing protein. (272 aa)
	A0A0C3G3B4	Uncharacterized protein. (590 aa)
	A0A0C3GCE8	Uncharacterized protein. (237 aa)
	A0A0C3ATS5	Uncharacterized protein. (272 aa)
	A0A0C3GGY8	TRUD domain-containing protein. (705 aa)
	A0A0C3GJI4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (195 aa)
	A0A0C3AWU5	HRDC domain-containing protein. (857 aa)
	A0A0C3AWV0	Uncharacterized protein. (355 aa)
	A0A0C3BZB4	Uncharacterized protein. (449 aa)
	A0A0C3BWG6	Uncharacterized protein. (336 aa)
	A0A0C3BP10	Uncharacterized protein. (317 aa)
	A0A0C3BL24	Uncharacterized protein. (261 aa)
	A0A0C3B5L8	Uncharacterized protein. (289 aa)
	A0A0C3C454	Uncharacterized protein. (262 aa)
	A0A0C3C6T7	PUA domain-containing protein. (512 aa)
	A0A0C3CHB3	Uncharacterized protein. (234 aa)
	A0A0C3EQW4	Uncharacterized protein. (326 aa)
	A0A0C3F7X0	RNase_PH domain-containing protein. (227 aa)
	A0A0C3FAP7	Uncharacterized protein. (82 aa)
	A0A0C3FG85	Exonuclease domain-containing protein. (628 aa)

Your Current Organism:

Piloderma croceum

NCBI taxonomy Id: 765440
Other names: P. croceum F 1598, Piloderma croceum F 1598

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C3ATS5	A0A0C3AWU5	Uncharacterized protein.	HRDC domain-containing protein.	0.970
A0A0C3ATS5	A0A0C3B5L8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0C3ATS5	A0A0C3BL24	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A0C3ATS5	A0A0C3BP10	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0C3ATS5	A0A0C3BWG6	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A0C3ATS5	A0A0C3C454	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0C3ATS5	A0A0C3CHB3	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0C3ATS5	A0A0C3F7X0	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A0C3ATS5	A0A0C3FI94	Uncharacterized protein.	RNase_PH domain-containing protein.	0.999
A0A0C3ATS5	A0A0C3FJY2	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A0C3ATS5	A0A0C3G3B4	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A0C3ATS5	A0A0C3GJI4	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.818
A0A0C3AWU5	A0A0C3ATS5	HRDC domain-containing protein.	Uncharacterized protein.	0.970
A0A0C3AWU5	A0A0C3B5L8	HRDC domain-containing protein.	Uncharacterized protein.	0.500
A0A0C3AWU5	A0A0C3BL24	HRDC domain-containing protein.	Uncharacterized protein.	0.500
A0A0C3AWU5	A0A0C3BP10	HRDC domain-containing protein.	Uncharacterized protein.	0.548
A0A0C3AWU5	A0A0C3C454	HRDC domain-containing protein.	Uncharacterized protein.	0.500
A0A0C3AWU5	A0A0C3CHB3	HRDC domain-containing protein.	Uncharacterized protein.	0.500
A0A0C3AWU5	A0A0C3F7X0	HRDC domain-containing protein.	RNase_PH domain-containing protein.	0.500
A0A0C3AWU5	A0A0C3FJY2	HRDC domain-containing protein.	Uncharacterized protein.	0.680