(32 nodes) Protein targeting to ER network (Piloderma croceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0C3AF74	Uncharacterized protein. (187 aa)
	A0A0C3AKB9	Uncharacterized protein. (167 aa)
	A0A0C3B383	Uncharacterized protein. (498 aa)
	A0A0C3B726	Uncharacterized protein. (548 aa)
	A0A0C3BC10	Uncharacterized protein. (205 aa)
	A0A0C3BGP2	Uncharacterized protein. (328 aa)
	A0A0C3BL49	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (573 aa)
	A0A0C3BM49	SRP54 domain-containing protein. (671 aa)
	A0A0C3BNE7	Signal peptidase subunit 3. (159 aa)
	A0A0C3C683	Uncharacterized protein. (357 aa)
	A0A0C3CNI1	Uncharacterized protein. (245 aa)
	A0A0C3EU51	Uncharacterized protein. (306 aa)
	A0A0C3EWS1	DUF4470 domain-containing protein. (632 aa)
	A0A0C3EZ64	SRP72 domain-containing protein. (332 aa)
	A0A0C3F4D1	Uncharacterized protein. (186 aa)
	A0A0C3F7U2	NAC-A/B domain-containing protein. (175 aa)
	A0A0C3F7Y5	Uncharacterized protein. (249 aa)
	A0A0C3F9C9	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (103 aa)
	A0A0C3FI66	J domain-containing protein. (665 aa)
	A0A0C3FK30	Uncharacterized protein. (162 aa)
	A0A0C3FN16	Plug_translocon domain-containing protein. (477 aa)
	A0A0C3FTS6	Uncharacterized protein. (162 aa)
	A0A0C3FYE4	Uncharacterized protein. (275 aa)
	A0A0C3G293	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (633 aa)
	A0A0C3G2Z8	Uncharacterized protein. (352 aa)
	A0A0C3G643	Uncharacterized protein. (283 aa)
	A0A0C3G829	Uncharacterized protein. (91 aa)
	A0A0C3G9F3	Uncharacterized protein. (230 aa)
	A0A0C3GAB4	Uncharacterized protein. (70 aa)
	A0A0C3GDL7	TPR_REGION domain-containing protein. (99 aa)
	A0A0C3GDQ1	SRP9-21 domain-containing protein. (122 aa)
	A0A0C3GIH5	Uncharacterized protein. (273 aa)

Your Current Organism:

Piloderma croceum

NCBI taxonomy Id: 765440
Other names: P. croceum F 1598, Piloderma croceum F 1598

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C3AF74	A0A0C3BC10	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3AF74	A0A0C3F9C9	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.763
A0A0C3AF74	A0A0C3G2Z8	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A0C3AKB9	A0A0C3BC10	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3AKB9	A0A0C3F9C9	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.763
A0A0C3AKB9	A0A0C3G2Z8	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A0C3B383	A0A0C3BC10	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3B383	A0A0C3F9C9	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.763
A0A0C3B383	A0A0C3G2Z8	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A0C3B726	A0A0C3BC10	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3B726	A0A0C3F9C9	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.763
A0A0C3B726	A0A0C3G2Z8	Uncharacterized protein.	Uncharacterized protein.	0.824
A0A0C3BC10	A0A0C3AF74	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3BC10	A0A0C3AKB9	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3BC10	A0A0C3B383	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3BC10	A0A0C3B726	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3BC10	A0A0C3BGP2	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A0C3BC10	A0A0C3EWS1	Uncharacterized protein.	DUF4470 domain-containing protein.	0.681
A0A0C3BC10	A0A0C3FK30	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A0C3BC10	A0A0C3GDL7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.681