(6 nodes) PAS complex network (Piloderma croceum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0C3GKU6	Uncharacterized protein. (927 aa)
	A0A0C3GK19	Uncharacterized protein. (1075 aa)
	A0A0C3G5X6	Uncharacterized protein. (818 aa)
	A0A0C3FU56	PIPK domain-containing protein. (1551 aa)
	A0A0C3CG75	Uncharacterized protein. (2315 aa)
	A0A0C3BU39	SAC domain-containing protein. (895 aa)

Your Current Organism:

Piloderma croceum

NCBI taxonomy Id: 765440
Other names: P. croceum F 1598, Piloderma croceum F 1598

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0C3BU39	A0A0C3CG75	SAC domain-containing protein.	Uncharacterized protein.	0.995
A0A0C3BU39	A0A0C3FU56	SAC domain-containing protein.	PIPK domain-containing protein.	0.993
A0A0C3BU39	A0A0C3GKU6	SAC domain-containing protein.	Uncharacterized protein.	0.989
A0A0C3CG75	A0A0C3BU39	Uncharacterized protein.	SAC domain-containing protein.	0.995
A0A0C3CG75	A0A0C3GKU6	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A0C3FU56	A0A0C3BU39	PIPK domain-containing protein.	SAC domain-containing protein.	0.993
A0A0C3FU56	A0A0C3GKU6	PIPK domain-containing protein.	Uncharacterized protein.	0.978
A0A0C3G5X6	A0A0C3GK19	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A0C3G5X6	A0A0C3GKU6	Uncharacterized protein.	Uncharacterized protein.	0.776
A0A0C3GK19	A0A0C3G5X6	Uncharacterized protein.	Uncharacterized protein.	0.899
A0A0C3GKU6	A0A0C3BU39	Uncharacterized protein.	SAC domain-containing protein.	0.989
A0A0C3GKU6	A0A0C3CG75	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A0C3GKU6	A0A0C3FU56	Uncharacterized protein.	PIPK domain-containing protein.	0.978
A0A0C3GKU6	A0A0C3G5X6	Uncharacterized protein.	Uncharacterized protein.	0.776