(33 nodes) RNA Polymerase I Transcription network (Pyrenochaeta sp. DS3sAY3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A178E4L4	RNA polymerase I associated factor, A49-like protein. (445 aa)
	A0A178DK44	TFIIH basal transcription factor complex helicase-like protein subunit. (794 aa)
	A0A178DMK8	RNA polymerase I-specific transcription initiation factor RRN3. (675 aa)
	A0A178DN27	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1698 aa)
	A0A178DQP7	Histone H2B; Belongs to the histone H2B family. (138 aa)
	A0A178DRN6	SprT-like domain-containing protein. (740 aa)
	A0A178DTA4	TFIIH basal transcription factor complex helicase XPB subunit. (802 aa)
	A0A178E5H2	Cyclin-like protein. (413 aa)
	A0A178DU70	Zn(2)-C6 fungal-type domain-containing protein. (715 aa)
	A0A178DWC9	RRN7-type domain-containing protein. (552 aa)
	A0A178DXT4	Uncharacterized protein. (165 aa)
	A0A178DZE3	Serine/threonine-protein kinase-like protein; Belongs to the protein kinase superfamily. (440 aa)
	A0A178E1Y0	DNA-directed RNA polymerases N/8 kDa subunit superfamily. (77 aa)
	A0A178ELV1	DNA-directed RNA polymerases I and III subunit RPAC1. (374 aa)
	A0A178EKU2	RNA polymerase Rpb6. (163 aa)
	A0A178EI97	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (462 aa)
	A0A178EFY0	Uncharacterized protein. (418 aa)
	A0A178EFS3	Nucleic acid-binding protein. (114 aa)
	A0A178EFG4	CDK-activating kinase assembly factor. (305 aa)
	A0A178EF71	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A178EE86	RNA polymerase II transcription factor-like protein. (651 aa)
	A0A178EDB3	Uncharacterized protein. (72 aa)
	A0A178EAW2	BTB domain-containing protein. (959 aa)
	A0A178E9G9	Uncharacterized protein. (866 aa)
	A0A178E8M9	Transcription initiation factor-like protein. (246 aa)
	A0A178E8E5	Uncharacterized protein. (1652 aa)
	A0A178E7U9	DNA-directed RNA polymerases I. (234 aa)
	A0A178E774	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1730 aa)
	A0A178E5I7	RPA43_OB domain-containing protein. (270 aa)
	A0A178E2H2	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (491 aa)
	A0A178E3H5	Uncharacterized protein. (71 aa)
	A0A178E3J8	Uncharacterized protein. (298 aa)
	A0A178E463	Transcription factor Tfb4. (377 aa)

Your Current Organism:

Pyrenochaeta sp. DS3sAY3a

NCBI taxonomy Id: 765867
Other names: P. sp. DS3sAY3a

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178DK44	A0A178DN27	TFIIH basal transcription factor complex helicase-like protein subunit.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.888
A0A178DK44	A0A178DRN6	TFIIH basal transcription factor complex helicase-like protein subunit.	SprT-like domain-containing protein.	0.599
A0A178DK44	A0A178DTA4	TFIIH basal transcription factor complex helicase-like protein subunit.	TFIIH basal transcription factor complex helicase XPB subunit.	0.999
A0A178DK44	A0A178DU70	TFIIH basal transcription factor complex helicase-like protein subunit.	Zn(2)-C6 fungal-type domain-containing protein.	0.924
A0A178DK44	A0A178DXT4	TFIIH basal transcription factor complex helicase-like protein subunit.	Uncharacterized protein.	0.842
A0A178DK44	A0A178DZE3	TFIIH basal transcription factor complex helicase-like protein subunit.	Serine/threonine-protein kinase-like protein; Belongs to the protein kinase superfamily.	0.984
A0A178DK44	A0A178E1Y0	TFIIH basal transcription factor complex helicase-like protein subunit.	DNA-directed RNA polymerases N/8 kDa subunit superfamily.	0.971
A0A178DK44	A0A178E2H2	TFIIH basal transcription factor complex helicase-like protein subunit.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
A0A178DK44	A0A178E3H5	TFIIH basal transcription factor complex helicase-like protein subunit.	Uncharacterized protein.	0.971
A0A178DK44	A0A178E3J8	TFIIH basal transcription factor complex helicase-like protein subunit.	Uncharacterized protein.	0.599
A0A178DK44	A0A178E463	TFIIH basal transcription factor complex helicase-like protein subunit.	Transcription factor Tfb4.	0.999
A0A178DK44	A0A178E5H2	TFIIH basal transcription factor complex helicase-like protein subunit.	Cyclin-like protein.	0.992
A0A178DK44	A0A178E5I7	TFIIH basal transcription factor complex helicase-like protein subunit.	RPA43_OB domain-containing protein.	0.705
A0A178DK44	A0A178E774	TFIIH basal transcription factor complex helicase-like protein subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.751
A0A178DK44	A0A178E7U9	TFIIH basal transcription factor complex helicase-like protein subunit.	DNA-directed RNA polymerases I.	0.972
A0A178DK44	A0A178E8E5	TFIIH basal transcription factor complex helicase-like protein subunit.	Uncharacterized protein.	0.449
A0A178DK44	A0A178E8M9	TFIIH basal transcription factor complex helicase-like protein subunit.	Transcription initiation factor-like protein.	0.972
A0A178DK44	A0A178EAW2	TFIIH basal transcription factor complex helicase-like protein subunit.	BTB domain-containing protein.	0.924
A0A178DK44	A0A178EDB3	TFIIH basal transcription factor complex helicase-like protein subunit.	Uncharacterized protein.	0.997
A0A178DK44	A0A178EE86	TFIIH basal transcription factor complex helicase-like protein subunit.	RNA polymerase II transcription factor-like protein.	0.999