(17 nodes) PAS fold network (Roseateles depolymerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV09020.1	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (693 aa)
	ALV05511.1	PpsR; Pfam:pfam02954 Bacterial regulatory protein, Fis family. (501 aa)
	ALV05632.1	Multi-sensor hybrid histidine kinase; Pfam:pfam03924 CHASE domain. (1534 aa)
	ALV05633.1	Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (647 aa)
	ALV05825.1	PAS domain S-box; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (866 aa)
	ALV05848.1	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (366 aa)
	ALV06096.1	Putative signaling protein; Pfam:pfam00563 EAL domain. (731 aa)
	ALV04688.1	Hypothetical protein; Pfam:pfam13185 GAF domain. (559 aa)
	ALV06555.1	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (656 aa)
	ALV06938.1	Virulence sensor protein BvgS; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (826 aa)
	ALV07286.1	Putative histidine kinase, atypical hybrid; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (671 aa)
	ALV08534.1	Signal transduction histidine kinase-like protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (927 aa)
	ALV08981.1	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (611 aa)
	ALV09040.1	Hypothetical protein; Pfam:pfam13185 GAF domain. (861 aa)
	ALV05138.1	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain. (701 aa)
	ALV05296.1	Cytochrome C biogenesis protein CcmE; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (647 aa)
	RD2015_82	Hypothetical protein; Pfam:pfam00990 GGDEF domain. (1884 aa)

Your Current Organism:

Roseateles depolymerans

NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV04688.1	ALV05138.1	RD2015_183	RD2015_641	Hypothetical protein; Pfam:pfam13185 GAF domain.	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	0.457
ALV04688.1	ALV05632.1	RD2015_183	RD2015_1139	Hypothetical protein; Pfam:pfam13185 GAF domain.	Multi-sensor hybrid histidine kinase; Pfam:pfam03924 CHASE domain.	0.719
ALV04688.1	ALV05633.1	RD2015_183	RD2015_1140	Hypothetical protein; Pfam:pfam13185 GAF domain.	Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.700
ALV04688.1	ALV06096.1	RD2015_183	RD2015_1611	Hypothetical protein; Pfam:pfam13185 GAF domain.	Putative signaling protein; Pfam:pfam00563 EAL domain.	0.573
ALV04688.1	ALV06555.1	RD2015_183	RD2015_2080	Hypothetical protein; Pfam:pfam13185 GAF domain.	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.521
ALV04688.1	ALV07286.1	RD2015_183	RD2015_2821	Hypothetical protein; Pfam:pfam13185 GAF domain.	Putative histidine kinase, atypical hybrid; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.543
ALV04688.1	ALV08534.1	RD2015_183	RD2015_4085	Hypothetical protein; Pfam:pfam13185 GAF domain.	Signal transduction histidine kinase-like protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.478
ALV04688.1	ALV08981.1	RD2015_183	RD2015_4540	Hypothetical protein; Pfam:pfam13185 GAF domain.	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.467
ALV04688.1	RD2015_82	RD2015_183	RD2015_82	Hypothetical protein; Pfam:pfam13185 GAF domain.	Hypothetical protein; Pfam:pfam00990 GGDEF domain.	0.660
ALV05138.1	ALV04688.1	RD2015_641	RD2015_183	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Hypothetical protein; Pfam:pfam13185 GAF domain.	0.457
ALV05138.1	ALV05632.1	RD2015_641	RD2015_1139	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Multi-sensor hybrid histidine kinase; Pfam:pfam03924 CHASE domain.	0.776
ALV05138.1	ALV05633.1	RD2015_641	RD2015_1140	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.762
ALV05138.1	ALV06096.1	RD2015_641	RD2015_1611	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Putative signaling protein; Pfam:pfam00563 EAL domain.	0.728
ALV05138.1	ALV07286.1	RD2015_641	RD2015_2821	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Putative histidine kinase, atypical hybrid; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.569
ALV05138.1	ALV08534.1	RD2015_641	RD2015_4085	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Signal transduction histidine kinase-like protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.587
ALV05138.1	ALV08981.1	RD2015_641	RD2015_4540	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.454
ALV05138.1	RD2015_82	RD2015_641	RD2015_82	Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain.	Hypothetical protein; Pfam:pfam00990 GGDEF domain.	0.781
ALV05296.1	ALV05632.1	RD2015_800	RD2015_1139	Cytochrome C biogenesis protein CcmE; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Multi-sensor hybrid histidine kinase; Pfam:pfam03924 CHASE domain.	0.888
ALV05296.1	ALV05633.1	RD2015_800	RD2015_1140	Cytochrome C biogenesis protein CcmE; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.861
ALV05296.1	ALV06096.1	RD2015_800	RD2015_1611	Cytochrome C biogenesis protein CcmE; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	Putative signaling protein; Pfam:pfam00563 EAL domain.	0.602