(6 nodes) FAD-binding, type PCMH, subdomain 1 network (Roseateles depolymerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV05338.1	Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase. (369 aa)
	ALV07451.1	D-2-hydroxyacid dehydrogenase; Pfam:pfam02913 FAD linked oxidases, C-terminal domain. (473 aa)
	murB	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (356 aa)
	ALV07173.1	Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase. (321 aa)
	ALV08413.1	Xanthine dehydrogenase small subunit; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase. (525 aa)
	ALV08920.1	Putative D-lactate dehydrogenase; Pfam:pfam01565 FAD binding domain. (469 aa)

Your Current Organism:

Roseateles depolymerans

NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV05338.1	ALV07173.1	RD2015_842	RD2015_2708	Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	0.908
ALV05338.1	ALV08413.1	RD2015_842	RD2015_3963	Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	Xanthine dehydrogenase small subunit; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	0.908
ALV07173.1	ALV05338.1	RD2015_2708	RD2015_842	Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	0.908
ALV07173.1	ALV08413.1	RD2015_2708	RD2015_3963	Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	Xanthine dehydrogenase small subunit; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	0.908
ALV08413.1	ALV05338.1	RD2015_3963	RD2015_842	Xanthine dehydrogenase small subunit; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	0.908
ALV08413.1	ALV07173.1	RD2015_3963	RD2015_2708	Xanthine dehydrogenase small subunit; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.	0.908