(31 nodes) Helix_turn_helix, Lux Regulon network (Roseateles depolymerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV05297.1	Histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (206 aa)
	ALV04622.1	Transcriptional activator protein LasR; Pfam:pfam03472 Autoinducer binding domain. (240 aa)
	ALV05770.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (228 aa)
	ALV05824.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (208 aa)
	ALV05853.1	Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain. (213 aa)
	ALV05858.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (124 aa)
	ALV06088.1	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (273 aa)
	ALV06193.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (215 aa)
	ALV06273.1	Pfam:pfam00072 Response regulator receiver domain. (247 aa)
	ALV06414.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (183 aa)
	ALV06421.1	Transcriptional regulator, LuxR family. (219 aa)
	ALV06494.1	Two component transcriptional regulator, LuxR family; Pfam:pfam00072 Response regulator receiver domain. (225 aa)
	ALV06594.1	Pfam:pfam00072 Response regulator receiver domain. (246 aa)
	ALV06886.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (222 aa)
	ALV07044.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (225 aa)
	ALV07134.1	Two component transcriptional regulator, LuxR family; Pfam:pfam00072 Response regulator receiver domain. (232 aa)
	ALV07344.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (246 aa)
	ALV07479.1	Hypothetical protein; Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (222 aa)
	ALV07542.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (176 aa)
	ALV07595.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (208 aa)
	ALV08051.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (224 aa)
	ALV08226.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (352 aa)
	ALV08529.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (224 aa)
	ALV08532.1	Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (213 aa)
	ALV08572.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (212 aa)
	ALV08688.1	Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (489 aa)
	ALV08903.1	Pfam:pfam00072 Response regulator receiver domain. (217 aa)
	ALV09019.1	Histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (218 aa)
	ALV09100.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (214 aa)
	ALV09168.1	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (214 aa)
	RD2015_55	Hisitidine kinase; Pfam:pfam00072 Response regulator receiver domain. (210 aa)

Your Current Organism:

Roseateles depolymerans

NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV05297.1	ALV09019.1	RD2015_801	RD2015_4578	Histidine kinase; Pfam:pfam00072 Response regulator receiver domain.	Histidine kinase; Pfam:pfam00072 Response regulator receiver domain.	0.907
ALV05770.1	ALV06273.1	RD2015_1279	RD2015_1792	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00072 Response regulator receiver domain.	0.758
ALV05770.1	ALV07134.1	RD2015_1279	RD2015_2669	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Two component transcriptional regulator, LuxR family; Pfam:pfam00072 Response regulator receiver domain.	0.774
ALV05770.1	ALV07344.1	RD2015_1279	RD2015_2880	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.774
ALV05770.1	ALV07595.1	RD2015_1279	RD2015_3134	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.774
ALV05770.1	ALV08529.1	RD2015_1279	RD2015_4080	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.774
ALV05770.1	ALV08532.1	RD2015_1279	RD2015_4083	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.	0.529
ALV05853.1	ALV06594.1	RD2015_1362	RD2015_2120	Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00072 Response regulator receiver domain.	0.774
ALV05853.1	ALV07344.1	RD2015_1362	RD2015_2880	Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.774
ALV05853.1	ALV07595.1	RD2015_1362	RD2015_3134	Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.774
ALV05853.1	ALV08529.1	RD2015_1362	RD2015_4080	Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.774
ALV05853.1	ALV08532.1	RD2015_1362	RD2015_4083	Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain.	Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.	0.534
ALV06088.1	ALV06273.1	RD2015_1603	RD2015_1792	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	Pfam:pfam00072 Response regulator receiver domain.	0.498
ALV06193.1	ALV08532.1	RD2015_1710	RD2015_4083	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.	0.557
ALV06193.1	ALV08572.1	RD2015_1710	RD2015_4123	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	0.917
ALV06193.1	RD2015_55	RD2015_1710	RD2015_55	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	Hisitidine kinase; Pfam:pfam00072 Response regulator receiver domain.	0.906
ALV06273.1	ALV05770.1	RD2015_1792	RD2015_1279	Pfam:pfam00072 Response regulator receiver domain.	LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.	0.758
ALV06273.1	ALV06088.1	RD2015_1792	RD2015_1603	Pfam:pfam00072 Response regulator receiver domain.	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.498
ALV06273.1	ALV07595.1	RD2015_1792	RD2015_3134	Pfam:pfam00072 Response regulator receiver domain.	Pfam:pfam00196 Bacterial regulatory proteins, luxR family.	0.763
ALV06273.1	ALV08532.1	RD2015_1792	RD2015_4083	Pfam:pfam00072 Response regulator receiver domain.	Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.	0.481