STRINGSTRING
ALV04946.1 ALV04946.1 ALV08903.1 ALV08903.1 ALV08948.1 ALV08948.1 ALV08949.1 ALV08949.1 ALV04956.1 ALV04956.1 ALV08995.1 ALV08995.1 ALV09019.1 ALV09019.1 ALV04963.1 ALV04963.1 ALV09050.1 ALV09050.1 ALV09053.1 ALV09053.1 ALV09056.1 ALV09056.1 ALV09061.1 ALV09061.1 ALV09100.1 ALV09100.1 ALV09118.1 ALV09118.1 ALV09146.1 ALV09146.1 ALV04974.1 ALV04974.1 ALV09168.1 ALV09168.1 ALV09224.1 ALV09224.1 ALV09256.1 ALV09256.1 ALV09265.1 ALV09265.1 RD2015_55 RD2015_55 RD2015_56 RD2015_56 ALV05161.1 ALV05161.1 ALV05199.1 ALV05199.1 ALV05278.1 ALV05278.1 ALV05297.1 ALV05297.1 ALV05301.1 ALV05301.1 ALV05332.1 ALV05332.1 ALV05632.1 ALV05632.1 ALV05630.1 ALV05630.1 ALV05631.1 ALV05631.1 ALV04945.1 ALV04945.1 ALV08847.1 ALV08847.1 ALV08768.1 ALV08768.1 ALV08725.1 ALV08725.1 ALV08700.1 ALV08700.1 ALV08680.1 ALV08680.1 ALV08679.1 ALV08679.1 ALV08669.1 ALV08669.1 ALV08648.1 ALV08648.1 ALV08627.1 ALV08627.1 ALV08608.1 ALV08608.1 ALV08579.1 ALV08579.1 ALV08578.1 ALV08578.1 ALV08575.1 ALV08575.1 ALV08572.1 ALV08572.1 ALV08571.1 ALV08571.1 ALV08532.1 ALV08532.1 ALV08531.1 ALV08531.1 ALV08447.1 ALV08447.1 ALV08387.1 ALV08387.1 ALV08386.1 ALV08386.1 ALV08258.1 ALV08258.1 ALV08226.1 ALV08226.1 ALV08225.1 ALV08225.1 ALV08177.1 ALV08177.1 ALV04874.1 ALV04874.1 cheB-3 cheB-3 ALV08136.1 ALV08136.1 ALV08051.1 ALV08051.1 ALV08044.1 ALV08044.1 ALV08030.1 ALV08030.1 ALV08023.1 ALV08023.1 ALV07933.1 ALV07933.1 ALV07849.1 ALV07849.1 ALV07730.1 ALV07730.1 ALV07695.1 ALV07695.1 ALV07658.1 ALV07658.1 ALV07623.1 ALV07623.1 ALV07584.1 ALV07584.1 ALV07522.1 ALV07522.1 ALV07479.1 ALV07479.1 ALV04803.1 ALV04803.1 ALV07424.1 ALV07424.1 ALV07344.1 ALV07344.1 ALV07286.1 ALV07286.1 ALV07285.1 ALV07285.1 ALV07273.1 ALV07273.1 ALV07268.1 ALV07268.1 ALV07249.1 ALV07249.1 ALV07209.1 ALV07209.1 ALV07189.1 ALV07189.1 ALV07176.1 ALV07176.1 ALV07175.1 ALV07175.1 ALV07159.1 ALV07159.1 ALV04771.1 ALV04771.1 ALV07134.1 ALV07134.1 ALV07133.1 ALV07133.1 ALV07075.1 ALV07075.1 ALV07044.1 ALV07044.1 ALV07020.1 ALV07020.1 ALV06965.1 ALV06965.1 ALV06962.1 ALV06962.1 cheB-2 cheB-2 ALV06950.1 ALV06950.1 ALV06947.1 ALV06947.1 ALV06935.1 ALV06935.1 ALV06898.1 ALV06898.1 ALV06897.1 ALV06897.1 ALV06896.1 ALV06896.1 ALV06886.1 ALV06886.1 ALV06877.1 ALV06877.1 ALV06802.1 ALV06802.1 ALV06738.1 ALV06738.1 ALV06617.1 ALV06617.1 ALV06594.1 ALV06594.1 ALV06562.1 ALV06562.1 ALV06561.1 ALV06561.1 ALV06555.1 ALV06555.1 ALV06532.1 ALV06532.1 ALV06526.1 ALV06526.1 ALV06522.1 ALV06522.1 ALV06520.1 ALV06520.1 ALV06501.1 ALV06501.1 ALV06494.1 ALV06494.1 ALV06411.1 ALV06411.1 ALV06354.1 ALV06354.1 ALV04690.1 ALV04690.1 ALV06328.1 ALV06328.1 ALV06273.1 ALV06273.1 ALV06251.1 ALV06251.1 ALV06249.1 ALV06249.1 ALV06231.1 ALV06231.1 ALV06193.1 ALV06193.1 ALV06192.1 ALV06192.1 ALV06190.1 ALV06190.1 ALV06074.1 ALV06074.1 ALV06052.1 ALV06052.1 ALV06050.1 ALV06050.1 ALV05853.1 ALV05853.1 ntrC ntrC ALV05824.1 ALV05824.1 ALV05801.1 ALV05801.1 ALV05770.1 ALV05770.1 ALV05675.1 ALV05675.1 cheB cheB ALV05673.1 ALV05673.1 ALV05672.1 ALV05672.1 ALV05658.1 ALV05658.1 ALV05635.1 ALV05635.1 ALV05633.1 ALV05633.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALV04946.1Transcriptional regulatory protein YycF; Pfam:pfam12728 Helix-turn-helix domain. (212 aa)
ALV08903.1Pfam:pfam00072 Response regulator receiver domain. (217 aa)
ALV08948.1Two component response regulator sensor histidine kinase/response regulator subunits; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (1028 aa)
ALV08949.1Pfam:pfam00072 Response regulator receiver domain. (390 aa)
ALV04956.1Two-component response regulator transcription protein; Pfam:pfam00072 Response regulator receiver domain. (273 aa)
ALV08995.1XRE family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (239 aa)
ALV09019.1Histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (218 aa)
ALV04963.1Diguanylate phosphodiesterase; Pfam:pfam00563 EAL domain. (815 aa)
ALV09050.1Chemotaxis protein CheY; Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (231 aa)
ALV09053.1PAS/PAC sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (1082 aa)
ALV09056.1Winged helix family two component transcriptional regulator; Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (236 aa)
ALV09061.1Pfam:pfam00072 Response regulator receiver domain. (286 aa)
ALV09100.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (214 aa)
ALV09118.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (130 aa)
ALV09146.1Pfam:pfam00072 Response regulator receiver domain. (223 aa)
ALV04974.1AraC family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (304 aa)
ALV09168.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (214 aa)
ALV09224.1Two component, sigma54 specific, transcriptional regulator, Fis family; Pfam:pfam00158 Sigma-54 interaction domain. (440 aa)
ALV09256.1Pfam:pfam00072 Response regulator receiver domain. (231 aa)
ALV09265.1Winged helix family two component transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (217 aa)
RD2015_55Hisitidine kinase; Pfam:pfam00072 Response regulator receiver domain. (210 aa)
RD2015_56Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (136 aa)
ALV05161.1Diguanylate cyclase (GGDEF) domain-containing protein; Pfam:pfam00990 GGDEF domain. (339 aa)
ALV05199.1Pfam:pfam00072 Response regulator receiver domain. (221 aa)
ALV05278.1Histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1241 aa)
ALV05297.1Histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (206 aa)
ALV05301.1Pfam:pfam00072 Response regulator receiver domain. (230 aa)
ALV05332.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (140 aa)
ALV05632.1Multi-sensor hybrid histidine kinase; Pfam:pfam03924 CHASE domain. (1534 aa)
ALV05630.1Pfam:pfam00072 Response regulator receiver domain. (187 aa)
ALV05631.1Response regulator receiver modulated metal dependent phosphohydrolase; Pfam:pfam00072 Response regulator receiver domain. (452 aa)
ALV04945.1Response regulator receiver and Hpt phospho transfer protein; Pfam:pfam00072 Response regulator receiver domain. (273 aa)
ALV08847.1Response regulator NasT; Pfam:pfam03861 ANTAR domain. (198 aa)
ALV08768.1Diguanylate cyclase (GGDEF) domain-containing protein; Pfam:pfam00563 EAL domain. (749 aa)
ALV08725.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (174 aa)
ALV08700.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (247 aa)
ALV08680.1Hypothetical protein; Pfam:pfam03924 CHASE domain. (1112 aa)
ALV08679.1Response regulator receiver modulated diguanylate cyclase; Pfam:pfam00990 GGDEF domain. (321 aa)
ALV08669.1PAS/PAC sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (705 aa)
ALV08648.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (620 aa)
ALV08627.1Hypothetical protein; Pfam:pfam11849 Domain of unknown function (DUF3369). (328 aa)
ALV08608.1Two-component system response regulator PilR; Pfam:pfam00158 Sigma-54 interaction domain. (591 aa)
ALV08579.1Pfam:pfam00072 Response regulator receiver domain. (126 aa)
ALV08578.1Pfam:pfam00072 Response regulator receiver domain. (121 aa)
ALV08575.1Chemotaxis protein CheA; Pfam:pfam00072 Response regulator receiver domain. (2219 aa)
ALV08572.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (212 aa)
ALV08571.1Putative transcriptional regulator; Pfam:pfam00990 GGDEF domain. (294 aa)
ALV08532.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (213 aa)
ALV08531.1Pfam:pfam00072 Response regulator receiver domain. (124 aa)
ALV08447.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (731 aa)
ALV08387.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (527 aa)
ALV08386.1Pfam:pfam00072 Response regulator receiver domain. (151 aa)
ALV08258.1Pfam:pfam00072 Response regulator receiver domain. (255 aa)
ALV08226.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (352 aa)
ALV08225.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (1207 aa)
ALV08177.1Transcriptional regulator, LytR/AlgR family; Pfam:pfam00072 Response regulator receiver domain. (268 aa)
ALV04874.1Pfam:pfam00072 Response regulator receiver domain. (228 aa)
cheB-3Chemotaxis protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (369 aa)
ALV08136.1Transcriptional regulator; Pfam:pfam04397 LytTr DNA-binding domain. (296 aa)
ALV08051.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (224 aa)
ALV08044.1Sensory box sensor histidine kinase/response regulator; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (623 aa)
ALV08030.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (644 aa)
ALV08023.1ATPase AAA; Pfam:pfam00158 Sigma-54 interaction domain. (451 aa)
ALV07933.1LytR family transcriptional regulator; Pfam:pfam04397 LytTr DNA-binding domain. (317 aa)
ALV07849.1Pfam:pfam00072 Response regulator receiver domain. (242 aa)
ALV07730.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (533 aa)
ALV07695.1Histidine kinase; Pfam:pfam00158 Sigma-54 interaction domain. (450 aa)
ALV07658.1Two component transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (264 aa)
ALV07623.1PAS/PAC sensor hybrid histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (157 aa)
ALV07584.1Pfam:pfam00072 Response regulator receiver domain. (225 aa)
ALV07522.1Histidine kinase; Pfam:pfam13426 PAS domain. (537 aa)
ALV07479.1Hypothetical protein; Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (222 aa)
ALV04803.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (204 aa)
ALV07424.1Two component transcriptional regulator, winged helix family; Pfam:pfam00072 Response regulator receiver domain. (219 aa)
ALV07344.1Pfam:pfam00196 Bacterial regulatory proteins, luxR family. (246 aa)
ALV07286.1Putative histidine kinase, atypical hybrid; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (671 aa)
ALV07285.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (152 aa)
ALV07273.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (119 aa)
ALV07268.1Fis family transcriptional regulator; Pfam:pfam00158 Sigma-54 interaction domain. (446 aa)
ALV07249.1Pfam:pfam00072 Response regulator receiver domain. (240 aa)
ALV07209.1Pfam:pfam00072 Response regulator receiver domain. (379 aa)
ALV07189.1Pfam:pfam00072 Response regulator receiver domain. (232 aa)
ALV07176.1Pfam:pfam00072 Response regulator receiver domain. (229 aa)
ALV07175.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (737 aa)
ALV07159.1Pfam:pfam00072 Response regulator receiver domain. (226 aa)
ALV04771.1Hypothetical protein; Pfam:pfam00990 GGDEF domain. (676 aa)
ALV07134.1Two component transcriptional regulator, LuxR family; Pfam:pfam00072 Response regulator receiver domain. (232 aa)
ALV07133.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (615 aa)
ALV07075.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (124 aa)
ALV07044.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (225 aa)
ALV07020.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (126 aa)
ALV06965.1Two component transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (239 aa)
ALV06962.1Pfam:pfam00072 Response regulator receiver domain. (231 aa)
cheB-2Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (392 aa)
ALV06950.1Pfam:pfam00072 Response regulator receiver domain. (146 aa)
ALV06947.1Pfam:pfam00072 Response regulator receiver domain. (122 aa)
ALV06935.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (123 aa)
ALV06898.1PAS domain S-box; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (487 aa)
ALV06897.1Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (274 aa)
ALV06896.1Response regulator; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (541 aa)
ALV06886.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (222 aa)
ALV06877.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (136 aa)
ALV06802.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (1314 aa)
ALV06738.1Fis family two component sigma-54 specific transcriptional regulator; Pfam:pfam00158 Sigma-54 interaction domain. (453 aa)
ALV06617.1Chemotaxis protein CheY; Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (233 aa)
ALV06594.1Pfam:pfam00072 Response regulator receiver domain. (246 aa)
ALV06562.1Two component hybrid sensor histidine kinase/response regulator protein; Pfam:pfam05227 CHASE3 domain. (1187 aa)
ALV06561.1Histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (396 aa)
ALV06555.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (656 aa)
ALV06532.1Integral membrane sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (785 aa)
ALV06526.1Pfam:pfam00072 Response regulator receiver domain. (183 aa)
ALV06522.1Sigma54 specific transcriptional regulator, Fis family; Pfam:pfam00158 Sigma-54 interaction domain. (497 aa)
ALV06520.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (801 aa)
ALV06501.1ABC-transporter; Pfam:pfam00005 ABC transporter. (905 aa)
ALV06494.1Two component transcriptional regulator, LuxR family; Pfam:pfam00072 Response regulator receiver domain. (225 aa)
ALV06411.1Pfam:pfam00486 Transcriptional regulatory protein, C terminal. (235 aa)
ALV06354.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (698 aa)
ALV04690.1Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (615 aa)
ALV06328.1Pfam:pfam00072 Response regulator receiver domain. (234 aa)
ALV06273.1Pfam:pfam00072 Response regulator receiver domain. (247 aa)
ALV06251.1Pfam:pfam00072 Response regulator receiver domain. (238 aa)
ALV06249.1Cyclic di-GMP phosphodiesterase Gmr; Pfam:pfam00563 EAL domain. (726 aa)
ALV06231.1Pfam:pfam00072 Response regulator receiver domain. (130 aa)
ALV06193.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (215 aa)
ALV06192.1Response regulator receiver sensor signal transduction histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (392 aa)
ALV06190.1Chemotaxis signal transduction protein CheY; Pfam:pfam00072 Response regulator receiver domain. (120 aa)
ALV06074.1Pfam:pfam00072 Response regulator receiver domain. (230 aa)
ALV06052.1Pfam:pfam00072 Response regulator receiver domain. (539 aa)
ALV06050.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (144 aa)
ALV05853.1Transcriptional regulatory protein degU; Pfam:pfam00072 Response regulator receiver domain. (213 aa)
ntrCChemotaxis protein CheY; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (493 aa)
ALV05824.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (208 aa)
ALV05801.1Hypothetical protein; Pfam:pfam00072 Response regulator receiver domain. (320 aa)
ALV05770.1LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain. (228 aa)
ALV05675.1Chemotaxis protein histidine kinase-like protein; Pfam:pfam00072 Response regulator receiver domain. (737 aa)
cheBChemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (356 aa)
ALV05673.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (989 aa)
ALV05672.1Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain. (265 aa)
ALV05658.1Pfam:pfam00072 Response regulator receiver domain. (186 aa)
ALV05635.1GAF sensor hybrid histidine kinase; Pfam:pfam00072 Response regulator receiver domain. (1321 aa)
ALV05633.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (647 aa)
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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